Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG

Basic information

species Glycine max
transcript GLYMA10G02040.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaat-ctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG
                             ||   ||||      |||| | | ||  || | |  | |     ||    ||||  | ||     | ||  ||       ||   || |  | |||    || || ||| | || ||| || |  |||||    | | ||||||| ||||||||||||||| |||  |||||||| |||||| |||| || || |||||    ||| |   | ||||| | || |||
---------------------------gtaagccttttgaacaagaatagccatg--atttttaagataactatctacttaaatggcttgacccatttcatt-----gttgaaatgatgattttt----tactggtttttattgaattctatgtttgttg---tttgtccagGTTATGCACATTGCAGCCGCAACAGAAATAAATTCAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207685655|gb|GD667713.1|GD667713
EST:     CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACC                         GTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC
genomic: CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctct ... ttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG
                        ttttaat  putative branch site (score: 3)
                                     ttgtttacttctttcc  putative PPT
      tttaaagtattgattt  TA-rich tract