Sequence
atgc intronic sequence ATGC exonic sequencegtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG
Basic information
species | Glycine max |
transcript | GLYMA10G02040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G02040.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctcttgtaattatatatatttccaattttttttttgttgaattgtcttgctatctgtgtggtgcaattcctgataaactgtttcttatactttgtttacccactgttctggtcttgtttaaagtattgatttctttttaat-ctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG
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---------------------------gtaagccttttgaacaagaatagccatg--atttttaagataactatctacttaaatggcttgacccatttcatt-----gttgaaatgatgattttt----tactggtttttattgaattctatgtttgttg---tttgtccagGTTATGCACATTGCAGCCGCAACAGAAATAAATTCAAGATTAATACCAAGTTTGAAGCATTTAGAAACTGCACTACATTCGAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207685655|gb|GD667713.1|GD667713EST: CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACC GTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC
genomic: CAAATGACCATGTCAATAGATCGCAGTCTTCTAATGATACATTCCCAACCgtaagcctct ... ttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcttgtttaaagtattgatttctttttaatctgtaattgtttacttctttccagGTAATGCACATTGCAGCCACAATGGAAATAAACTCAAGACTAATTCCCAGCTTGAAAACCTTACACGGTACACTAAACTCAAAG
ttttaat putative branch site (score: 3)
ttgtttacttctttcc putative PPT
tttaaagtattgattt TA-rich tract