1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagttacttatagatatgcaaagtccttacccataacatatccaatattgtccttccataatatctaactttcctgagatgtatcactgccttttcaaatgtctcaggatagtccttcccttggtttaggatttctatacttatttatcctctctgattccagGAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACCATATCGCTGCTTGTTTAAAGATGGTTCTGTAAAAAATGTAG
species | Glycine max |
transcript | GLYMA10G00610.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCATEST: gi|11274935|gb|BF325260.1|BF325260
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCAT
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATNTGATCAGTCATTACAT GAGTTCCCTCCACTAGATCAGTTGAEST: gi|192294686|gb|FG986535.1|FG986535
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAGTTGA
EST: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACAT GAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCAT
genomic: TTAAACAGTCTGCATCAGATTATGTGAAAGGATTTGATCAGTCATTACATgtaagttact ... ctgattccagGAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCAT
atagtccttcccttggtttaggatttctatacttatttatcctctctgattccagGAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACCATATCGCTGCTTGTTTAAAGATGGTTCTGTAAAAAATGTAG
ctctgat putative branch site (score: 4)
cttatttatcctctct CT-rich tract
atttctatacttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacttatagatatgcaaagtccttacccataacatatccaatattgtccttccataatatctaactttcctgagatgtatcactgccttttcaaatgtctcaggatagtccttcccttggtttaggatttctatacttatttatcctctctgattccagGAGTTCCCTCCACTAGATCAGTTGAAGCAGCAGTTTTCTGATAAAGTTCATCTAGAACCATATCGCTGCTTGTTTAAAGATGGTTCTGTAAAAAATGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG