1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatacattctattctatttctaccttaaacaacgttttgttcaagagaaattttaagattctttagttgtatattttgatttcagtatacttatttatatttttgttttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGAG
species | Glycine max |
transcript | GLYMA10G00300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAG GTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAEST: gi|51335565|gb|CO979431.1|CO979431
genomic: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAGgtatacattc ... ttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAA
EST: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAG GTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAEST: gi|298182242|gb|HO026417.1|HO026417
genomic: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAGgtatacattc ... ttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAA
EST: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAG GTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAA
genomic: CACAAGAAGGTTACTTTTTGGTAACTGCCTCGTATGATATGACTGCTAAGgtatacattc ... ttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAA
ttagttgtatattttgatttcagtatacttatttatatttttgttttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGAG
ttttaac putative branch site (score: 2)
tttttgtttt CT-rich tract
tatattttgatttcag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacattctattctatttctaccttaaacaacgttttgttcaagagaaattttaagattctttagttgtatattttgatttcagtatacttatttatatttttgttttaactgcagGTTTGGTCAGGCCGTGACTTTAAGCCTGTGAAGACACTATCAGGGCATGAAGCTAAAGTTACTTCTGTGGATGTTCTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG