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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagaggcagcctttctagatatcttgacttctttctaaccgtattatattttctaatacgtatttttaactgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG

Basic information

species Glycine max
transcript GLYMA09G41070.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208159468|gb|GD955273.1|GD955273
EST:     TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG                         GTAAGTTGTCAAGACCTTCTGTGCTCAAGGCAATCTGTTCAGGCTACCTAG
genomic: TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGgtcagaggca ... ctgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
EST: gi|10709069|gb|BF008793.1|BF008793
EST:     TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG                         GTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
genomic: TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGgtcagaggca ... ctgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
EST: gi|27423591|gb|CA935111.1|CA935111
EST:     TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG                         GTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
genomic: TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGgtcagaggca ... ctgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
EST: gi|20811827|gb|BQ296305.1|BQ296305
EST:     TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG                         GTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
genomic: TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGgtcagaggca ... ctgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
EST: gi|151407222|gb|EV277037.1|EV277037
EST:     TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAG                         GTGAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG
genomic: TGATGTTACTATACTGCCTACTCTTGTTATAAACAACAGACAGTATAGAGgtcagaggca ... ctgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacttctttctaaccgtattatattttctaatacgtatttttaactgcttttagGTAAGTTGTCAAGACCTTCTGTTCTCAAGGCAATCTGTTCAGGCTACCTAGAGACCACTGAACCATCAATTTGCTTAACTTCAG
                                             ctgctttt  CT-rich tract
                 tattatattttctaat  TA-rich tract