1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttcaattcaacatgaactagaggacactatcacatattaaacattgtctgatgaccatgtagtttattgaacatgggtggtttcattgcatatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGACAACAACTTGACAAACTTGTAGGAGCCAACAAGCCAGAAC
species | Glycine max |
transcript | GLYMA09G40970.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTEST: gi|193404233|gb|FK366567.1|FK366567
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: AGAAATACACATCTATGATGTTCTTGCTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTEST: gi|15203337|gb|BI426105.1|BI426105
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCCTCTTTCTTEST: gi|208188050|gb|GD986864.1|GD986864
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: TGGATGATCTTAACTT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTEST: gi|13479405|gb|BG508748.1|BG508748
genomic: TGGATGATC-TAAC-Tgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCT
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTEST: gi|7478449|gb|AW666269.1|AW666269
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTATCTTEST: gi|21257008|gb|BQ453896.1|BQ453896
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTEST: gi|13790090|gb|BG652681.1|BG652681
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
EST: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACT GACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
genomic: AGAAATACACATCTATGATGTTCTTGTTAGTTGATGTGGATGATCTAACTgtaagtactg ... tatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTT
gtctgatgaccatgtagtttattgaacatgggtggtttcattgcatatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGACAACAACTTGACAAACTTGTAGGAGCCAACAAGCCAGAAC
gtctgat putative branch site (score: 4)
tagtttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcaattcaacatgaactagaggacactatcacatattaaacattgtctgatgaccatgtagtttattgaacatgggtggtttcattgcatatgttccagGACTTCAGCACTTCATGGGACATCAAAGCCACACCAACTTTCTTCTTTCTTAAAGATGGACAACAACTTGACAAACTTGTAGGAGCCAACAAGCCAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- caattca
- - - - - catgaac
- - - - - - - - - - - - - - - - - - - - - - - tctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggtgg