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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggaaataataaaatatatatatttttctgtagcatcatgtttttttttctgtattattatatgaaaataccatctagcagtataagagttttgtgtttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAG

Basic information

species Glycine max
transcript GLYMA09G40060.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254336246|gb|GR842425.1|GR842425
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTGGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|298179034|gb|HO024769.1|HO024769
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|58015330|gb|CX702072.1|CX702072
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254343225|gb|GR856929.1|GR856929
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254324273|gb|GR840590.1|GR840590
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|192323627|gb|FK019038.1|FK019038
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|213589574|gb|DB973217.1|DB973217
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254343224|gb|GR856928.1|GR856928
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|151394416|gb|EV264287.1|EV264287
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|8403460|gb|BE059094.1|BE059094
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|120492016|gb|EH220183.1|EH220183
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254324274|gb|GR840591.1|GR840591
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|207689495|gb|GD671888.1|GD671888
EST:     TGTGTGCCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|7686223|gb|AW756934.1|AW756934
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTNTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|19348498|gb|BM893030.1|BM893030
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|58015584|gb|CX702326.1|CX702326
EST:     TTGTTTCTTGATCAATTTGTGTGGC-TGGCAG-ACAGGGGCATCTACCAG                         AATAAAGAGCGCACCG-ACTAAATTGGCCGGATATCTCTTTACTGTTGGTT
genomic: TTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACA--GGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACT-AATTGGCCGGATATCTCTTTACTGTTGGTT
EST: gi|7639927|gb|AW734239.1|AW734239
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|21888536|gb|BQ741749.1|BQ741749
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|19269910|gb|BM886166.1|BM886166
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254336245|gb|GR842424.1|GR842424
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGGCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|22927124|gb|BU544263.1|BU544263
EST:     GGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: GGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|27425936|gb|CA937456.1|CA937456
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|23729522|gb|BU762853.1|BU762853
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCG
EST: gi|48575471|gb|CO036420.1|CO036420
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|6724567|gb|AW308966.1|AW308966
EST:     AGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: AGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|19348375|gb|BM892907.1|BM892907
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|14259242|gb|BG882150.1|BG882150
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|254335608|gb|GR847136.1|GR847136
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|192316781|gb|FK006484.1|FK006484
EST:     GGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: GGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|23057464|gb|BU578138.1|BU578138
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|7691181|gb|AW759313.1|AW759313
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|213607370|gb|DB967079.1|DB967079
EST:     TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
EST: gi|22932789|gb|BU549928.1|BU549928
EST:     TCTTGNNNNNTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAG                         AATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG
genomic: TCTTGTTTCTTGATCAATTTGTGTGGCTTGGCAGAACAGGCATCTACCAGgttggaaata ... ttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattatatgaaaataccatctagcagtataagagttttgtgtttaattacagAATAAAGAGCGCACCGAACTAATTGGCCGGATATCTCTTTACTGTTGGTTGGGATCCTCGGTGTGTGCCACCTTGGTTGAG
                                           gtttaat  putative branch site (score: 4)
                                     ttttgtgtttaatta  TA-rich tract