1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaatgaaattcattaaatttttatagaacatttgtggttttgttctaagttttatattttgacatatttgtttttggttcattttatatgtcaaaatctattttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCCGCTTTAATGATGCGTGA
species | Glycine max |
transcript | GLYMA09G39370.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|151393517|gb|EV263392.1|EV263392
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|254327210|gb|GR836819.1|GR836819
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|192294831|gb|FG987520.1|FG987520
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|254324140|gb|GR836265.1|GR836265
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: GTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|151395834|gb|EV265711.1|EV265711
genomic: GTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|298193444|gb|HO033878.1|HO033878
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|298195504|gb|HO043895.1|HO043895
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTAAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|254327211|gb|GR836820.1|GR836820
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|7924716|gb|AW830742.1|AW830742
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGGTGTTTCTACCTCAACTTCTGCTGTATCCCEST: gi|17020964|gb|BM091998.1|BM091998
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGG-TGTTTCTACCTCAACTTCTGCTGTATCCC
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|298191356|gb|HO038835.1|HO038835
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|21285429|gb|BQ473300.1|BQ473300
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAEST: gi|16343018|gb|BI968613.1|BI968613
genomic: AGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
EST: AATCAAACCTGGAGCCCCATGTTCG ATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
genomic: AATCAAACCTGGAGCCCCATGTTCGgtaatgaaat ... tttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCA
ttttgacatatttgtttttggttcattttatatgtcaaaatctattttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCCGCTTTAATGATGCGTGA
ttttgac putative branch site (score: 3)
ttttgttcc putative PPT
ttcattttatatgtca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaaattcattaaatttttatagaacatttgtggttttgttctaagttttatattttgacatatttgtttttggttcattttatatgtcaaaatctattttgttccagATCTTGTTAATGTGTTTGAGGTGTTTCTACCTCAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCCGCTTTAATGATGCGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC