1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agataatttttctatttaatatctgacacctgattgttttgtttgattgctgatattaataatctaattcaatatttttttctgtttctttttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCA
species | Glycine max |
transcript | GLYMA09G38650.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CCATGAATATTTTAGGCTATCCTCTCCGCCCA AATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGEST: gi|254331899|gb|GR846209.1|GR846209
genomic: CCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattg ... tttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCA AATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGEST: gi|26057548|gb|CA800462.1|CA800462
genomic: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattg ... tttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCA AATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGEST: gi|207770523|gb|GD742879.1|GD742879
genomic: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattg ... tttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGG
EST: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCA AATGAGCCTGAATGTGCTTATTATTTAAGAACTGGAACAATGTAAATTTGG
genomic: GGATTGCTGGAAGAGTTGCCATGAATATTTTAGGCTATCCTCTCCGCCCAgttagtattg ... tttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGA-CAATGTAAATTTGG
attgctgatattaataatctaattcaatatttttttctgtttctttttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCA
tatttttttctgtttc CT-rich tract
atattaataatctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agataatttttctatttaatatctgacacctgattgttttgtttgattgctgatattaataatctaattcaatatttttttctgtttctttttgatacagAATGAGCCTGAATGTGCTTATTATTTAAGAACTGGACAATGTAAATTTGGGAACACTTGCAAATTTCACCATCCTCAACCAAACAATATGGTGCTTTCCA
- - - - - - - - - - - ctgacac
- - - - - - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - - - - - - -tgctgat