1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agagcactatttctgggtgctctaactcttcatattaatgttatcaggatactgataaaaaaaaattatcaggattaaatttattgtacgtgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGCATACAAATAGTGCTGCTACAG
species | Glycine max |
transcript | GLYMA09G38640.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGEST: gi|207777604|gb|GD747537.1|GD747537
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGEST: gi|192297697|gb|FG992775.1|FG992775
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTAC-----TTGGCAGGATTGTGCCTAATTTGATTTCTAGGA-GEST: gi|26045883|gb|CA783315.1|CA783315
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGEST: gi|151405478|gb|EV275292.1|EV275292
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGEST: gi|208288397|gb|GE088750.1|GE088750
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
EST: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACA GTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
genomic: CTAAGTCAATTGTCTTGTCTGGTGCGCTCAGTGCTCTGATTATAATGACAgtaagtgcaa ... tgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAG
aggatactgataaaaaaaaattatcaggattaaatttattgtacgtgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGCATACAAATAGTGCTGCTACAG
tactgat putative branch site (score: 2)
tgataaaaaaaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagcactatttctgggtgctctaactcttcatattaatgttatcaggatactgataaaaaaaaattatcaggattaaatttattgtacgtgtcaattagGTACTTTCTACAGGGCTTGGCAGGATTGTGCCTAATTTGATTTCTAGGAAGCATACAAATAGTGCTGCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - -tgggtgc
- - - - - - - - - - - - -ctcttca
- - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa