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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagatcttatctattgtataattttatatttttgtgtcatgaatttttgaaaccttatgtgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAA

Basic information

species Glycine max
transcript GLYMA09G38440.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38440.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0023g00760.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------gtagatcttatctattg-tataattt-tatatttttgtgtcatgaatttttgaaacct-tatgtgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAA
                                           |  ||      |||| ||||     | || |   |    |    ||| |  | | |  ||| | |   ||||   |||||||||| ||||||||| |||| ||  ||||  | |||||||||||||| ||||||||||||||||| ||||||
gtgattcttctctagctagtgatttagttcaatcttaataatcatttcaggatgattggtataggccatttaatccagcagtacttttttattcagcttacatgaggacctttctcattttagGTTGGGGACAAAGTACAGAAAGGAAAAGTCTTGTGCATCATTGAGGCCATGAAATTGATGAATGAGATAGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8670260|gb|BE191367.1|BE191367
EST:     CAGGGACATTCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAG                         GTTG-AGACAAAGTAA-GAAGGG-CAAGTTGTATGCATCATTGAGGCAATG
genomic: CAGGGACATTCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAGgtagatctta ... cttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
EST: gi|6134057|gb|AW132386.1|AW132386
EST:     AGGGACATNTCTAC-GAAGTCCTGCACCCGGTGAACCTNCCTTTGTGAAG                         GTNGCAGACAAAGTAA-GAAGGGGCA-GTTG-ATGCATCATTGAGGCAATG
genomic: AGGGACAT-TCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAGgtagatctta ... cttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
EST: gi|16277267|gb|BI942292.1|BI942292
EST:     CAGGGACATTCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAG                         GTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG
genomic: CAGGGACATTCTACCGAAGTCCTGCACCCGGTGAACCTCCCTTTGTGAAGgtagatctta ... cttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatttttgtgtcatgaatttttgaaaccttatgtgaagtattcttcctttagGTTGGAGACAAAGTAAAGAAGGGGCAAGTTGTATGCATCATTGAGGCAATGAAATTGATGAATGAAATAGAA
                                         tattcttccttt  CT-rich tract
               atgaatttttgaaa  TA-rich tract