1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tagaacattatgggttcatttgatccatgtagctgaactcacggagtgggaaaaggtttggttgttgaggtttttaactttgtctaaattgaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGAACTTAGAACTAAGAGAGCGGACAAGCAG
species | Glycine max |
transcript | GLYMA09G38430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG ATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAEST: gi|6566492|gb|AW234137.1|AW234137
genomic: TGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATGgtattgtact ... gaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTA
EST: GAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG ATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGEST: gi|254336538|gb|GR842717.1|GR842717
genomic: GAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATGgtattgtact ... gaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGG
EST: TGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATG ATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGEST: gi|193324067|gb|FK288777.1|FK288777
genomic: TGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATGgtattgtact ... gaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGG
EST: TGAGTTGTCGAAGCAGATCAAAGAGAAATTGAAAGAAGCTGATCAATATG ATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGG
genomic: TGAGTTGTCGAAGCAAATCAAAGAGAAATTGAAAGAAGCTGATCAATATGgtattgtact ... gaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGG
gtgggaaaaggtttggttgttgaggtttttaactttgtctaaattgaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGAACTTAGAACTAAGAGAGCGGACAAGCAG
tctaaattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaacattatgggttcatttgatccatgtagctgaactcacggagtgggaaaaggtttggttgttgaggtttttaactttgtctaaattgaatttgcagATCTTGAAGGCAAGTCAGATCTCAAGATTCGAGCTTTAGAGGTTGTAGAGGAACTTAGAACTAAGAGAGCGGACAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - ccatgta
- - - - - - - - - - - - - - - - - -aactcac
- - - - - - - - - - - - - - - - - - - - - -gagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgagg