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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcaatagcaaatggttttgtctgtcttgttctatcttctgctgttgctattattgcaaacagtgggcttgtttatttaccatattgtaccattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAG

Basic information

species Glycine max
transcript GLYMA09G38110.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38110.2 (Glycine max), 3'ss of exon 4
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 3'ss of exon 5
--------------------------------------------------------ttcaatagcaaatggttttgtctgtcttgttctatcttctgctgttgctattattgcaaacagtgggcttgtttatttaccatattgtaccattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAG
                                                        | |   |   || |  |||||   ||   |   |||||     ||   |||||||  | ||| || |   | | | || |  |  | | |  ||  |||||| |||||||| |||||||| || ||||| || |  ||||||||||||||||| ||||||
gtttcttgaatcttcctctcttctttagttttctgctcctcttgtctccactttgatgcttaattgaacgcatttgtaaatca-atgtaatcttgcatagtcattattattcaacacactgcga--ggtaaatttctttgatttgc--ttgtccagGTATTTGAGGGAACATCTGGAATCGACAACAAGTACACAACTGTGCAATTTACAGGAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723248|gb|BW675195.1|BW675195
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|298183011|gb|HO028274.1|HO028274
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|213617416|gb|DB965231.1|DB965231
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|6567285|gb|AW234896.1|AW234896
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|5342420|gb|AI794704.1|AI794704
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|213607123|gb|DB967000.1|DB967000
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|10709431|gb|BF009155.1|BF009155
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|7589581|gb|AW705352.1|AW705352
EST:     GTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: GTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|213592755|gb|DB957813.1|DB957813
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
EST: gi|213602215|gb|DB958475.1|DB958475
EST:     CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAG                         GTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT
genomic: CTCGGCGTGGACAAGTGCTAGAAGTTGATGGTGAAAAGGCTGTTGTTCAGgtttgcctac ... cattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctattattgcaaacagtgggcttgtttatttaccatattgtaccattcaccagGTCTTTGAGGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTTACCGGAGAG
                          tttatttaccatatt  TA-rich tract