Sequence
atgc intronic sequence ATGC exonic sequencegtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
Basic information
species | Glycine max |
transcript | GLYMA09G36570.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os10g40555.1 (Oryza sativa), 3'ss of exon 3
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcata-cactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgt-tggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
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-------------------------------------------------------gtaaggaatttatgttcacatgtaaaatactccccctgctaaccttttgcatttttcactctttgttgactctctcttatgtgtgttttgttctttagGTTTTTGACTTTGTGAAACTAACTGAACTGTATTACGCTGGAAGTCATGGAATGGATATCATGGGGCCTGTTAGGAAGTCTGATTCGAGTGGTCAGCATG
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os07g30160.1 (Oryza sativa), 3'ss of exon 4
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
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-----------------------------------gtgcatatgttatttaaaaggtt-tcgacgtaatcattg-tgctgatataatagtaaattgatatgttatctgtcatt--ctgatactaactgt-acctttttgtatcaattttagGTGTTTGATTTTGTTAAACTAACAGAATTGTACTATGCTGGTAGCCATGGAATGGACATCATGGGTCCAGTTGGGGAACATGATTCAGTTACTAACCATA
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G178546_T01 (Zea mays), 3'ss of exon 4
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
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--------------------------------------------------------------------gtat-acagtgt-tattgttcattgcacaaataactcctatcagcattttgcatt---tttctcattgtttctttt-----agGTTTTTGACTTTGTGAAGCTAAATGAATTGTACTACGCTGGAAGCCATGGAATGGACATAATGGGCCCTGTTAGGAAGACTACTGACTCCAATGGCGTGG
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: AT5G51460.1 (Arabidopsis thaliana), 3'ss of exon 4
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
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-------------------------------------------------------gtaatctttctaca------tgttttattttcttcatcaagaacattttcttgt--gtgatctaatgtaataatagtac-attttgcttcatctagGTGTATGAGTTTGTTAATTTGAGTGAACTTTATTACGCCGGAAGCCATGGAATGGACATCATGAGTCCCGCAGGAGAATCTTTAAACCATGAACATAGCC
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0022g00660.t01 (Vitis vinifera), 3'ss of exon 3
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
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-----------gtaattggcaggcttttgagtgtgtgctattattttaaaatcattatggcaatttcctcccatttatatcagttttccttctatagatggtttttcatct-tcactgactt---gttacgtaac-ctactattcatttagGTGTATAATTTTGTGGGACTAACAGAGCTCTACTACGCTGGTAGTCATGGGATGGACATCATGGGCCCTGTCAGACACTCCATTTCTAATGACCATCCAA
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S46_31V6.1 (Physcomitrella patens), 3'ss of exon 4
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA--
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-----------------------------------------------tggatcttcagaaat-tttgtgcgaagttg-atttaggtttgtg--aagggagttgaagctacaattaagaggtcttcttgtggttgcttcgattttggagcagGTGTTTGAGTTTGTGCAATTGACAGAACTATATTACGCTGGAAGTCATGGCATGGATATCATGGGACCTGC-AAAGAGTTCAGATG-GGTATCGAGTGAAGG
upper sequence: GLYMA09G36570.2 (Glycine max), 3'ss of exon 3
lower sequence: PP1S227_48V6.1 (Physcomitrella patens), 3'ss of exon 3
gtagttgaacaatttttagaaaaacacatacaattttctatctctttttaattcccttatctatctgagcaccactgcatacactcctgctcccaagaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA--
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----------------------------------------------tggatctattttgagattttaatcaggattgattttggtgagatgcatgcgaaagcttcaattaggaggcgtgctcacagctt----ttatggtt-ttggagcagGTGTTTGATTTTGTGCAATTGACAGAACTGTATTACGCTGGGAGTCATGGCATGGATATCATGGGCCCTGCTAAA-AGCTCGGATG-GTTTCCGAGTTAAGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6566157|gb|AW233794.1|AW233794EST: GAAGTCGTGATAAG GTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGA
genomic: GAAGTCGTGATAAGgtagttgaac ... gttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagcttccttgtcagttgctggttctaactttcgtattaccgctgttggctcagGTATATCAATTTGTAGGACTAACAGAACTTTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTGTATCTGATAATCACCTAA
ttctaac putative branch site (score: 1)
taacttt TA-rich tract