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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaggcacccaccccctctttctactcttatgttatcttttttttttcttttcttttttctttttggttattgtcttgagtttattttgaatgtcctcattgatgtttcttgtgatttgcagGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTGGATGCTAGAGACCAATTTGATCTTCAACTTG

Basic information

species Glycine max
transcript GLYMA09G35980.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193576783|gb|FK537980.1|FK537980
EST:     GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAA                         GAAGCAGCAGCAGCA
genomic: GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAgtacaggcac ... tgatttgcagGAAGCAGCAGCAGCA
EST: gi|7693469|gb|AW761561.1|AW761561
EST:     CGAG-GCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACA                     
genomic: CGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGAC----A-Agtacaggcac ... tgattt
EST: gi|7693469|gb|AW761561.1|AW761561
EST:     CGAG-GCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACA                     
genomic: CGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGAC----A-Agtacaggcac ... tgattt
EST: gi|13788001|gb|BG650593.1|BG650593
EST:     GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAA                         GAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC
genomic: GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAgtacaggcac ... tgatttgcagGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC
EST: gi|13787910|gb|BG650502.1|BG650502
EST:     GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAA                         GAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC
genomic: GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAgtacaggcac ... tgatttgcagGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC
EST: gi|17152898|gb|BM142831.1|BM142831
EST:     GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAA                         GAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC
genomic: GCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAgtacaggcac ... tgatttgcagGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattgtcttgagtttattttgaatgtcctcattgatgtttcttgtgatttgcagGAAGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTGGATGCTAGAGACCAATTTGATCTTCAACTTG
                              cattgat  putative branch site (score: 4)
                                      tttcttgt  CT-rich tract
           agtttattttgaat  TA-rich tract