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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaattagcacaattttttttacctataaatattacttgttaatttattatttttttagtaaaaaaaattcaaactcaccacctctatatatagttcaagttgtgtacgttgctactataacatgcatggttgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCA

Basic information

species Glycine max
transcript GLYMA09G35680.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14008904|gb|BG725508.1|BG725508
EST:     GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAG                         GACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCATCA
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAGgtacttaatt ... tgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
EST: gi|6069513|gb|AW099184.1|AW099184
EST:     GTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCCTGTCCCTTCAG                         GACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
genomic: GTGCTCAACTTCTGATTATGTTAAGTTGCTGGAAT-CCCTGTCCCTTCAGgtacttaatt ... tgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
EST: gi|208124038|gb|GD925528.1|GD925528
EST:     GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAG                         GACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAGgtacttaatt ... tgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
EST: gi|209718925|gb|BW669114.1|BW669114
EST:     GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAG                         GACATCAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA
genomic: GGTGCTCAACTTCTGATTATGTTAAGTTGCTGGAATCCCTGTCCCTTCAGgtacttaatt ... tgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatagttcaagttgtgtacgttgctactataacatgcatggttgctatgtagGACATTAAATCAGCAGATTGGTCTCCCTTTGTTGCTCCATTTTGGCCAGCAGTGATACGCACCGCCCTGACCTGGAATGGCCTCACTTCACTCTTGCGCA
                             ctataac  putative branch site (score: 3)
                           tactataa  TA-rich tract