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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaatttggcttttggccttttgcgcttatgttgtttttgtttatgccgtgaggttgataattgatattttgttctctataattcagTGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTAGTAGTTACCTCCTTGCAAGGGCTTCTCTTCAATTTGGTAACACATATGA

Basic information

species Glycine max
transcript GLYMA09G34950.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|302141336|gb|HO212212.1|HO212212
EST:     TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAG                         TGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA
genomic: TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAGgtgaatttgg ... tataattcagTGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA
EST: gi|209713197|gb|BW681732.1|BW681732
EST:     TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAG                         TGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA
genomic: TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAGgtgaatttgg ... tataattcagTGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA
EST: gi|151395193|gb|EV265064.1|EV265064
EST:     TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAG                         TGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA
genomic: TCGTGCAATTGAAGGATTCGTTTCTGTTTGCTCCAAGCAAATGGAGATAGgtgaatttgg ... tataattcagTGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttgtttatgccgtgaggttgataattgatattttgttctctataattcagTGAGGAGGATGGCTAGGGACTGTTGTAAGTATGGGACAGAGAATCTTGGTAGTAGTTACCTCCTTGCAAGGGCTTCTCTTCAATTTGGTAACACATATGA
                           aattgat  putative branch site (score: 4)
                                   ttttgttctct  CT-rich tract
                         ataattgatattttgt  TA-rich tract