Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaggtaattcagatgttccattatctattttgattgtggtaggcattttcatttctgatgaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGG

Basic information

species Glycine max
transcript GLYMA09G34760.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os08g06560.1 (Oryza sativa), 3'ss of exon 2
gttaaggtaattcagatgttcc--attatctattt-tgattgtggtaggcattttcatttctgatgaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCT----TGCCTATTGT---GAGGGAGAAGCCAACTGTTGAACTTGTAAAGG
 |    | | ||  | ||| ||  | |   | | | || || | | ||| ||| || | |      |    ||   |  |   || |||||       |  | ||  |||        ||||||||||||| ||| ||||||||||||| | ||| || || |||||||||| ||  |    |||||||||      | |||||||   | |||||   |       
atggctgcagttt-gttgtccctgactccttgtatatgtttatcgaaggtattgtcttct------agatctggttttgagcttgattgtgc------tagctcttgtgtc-------agGCTGGTGATTCCACTGCCGAGGAGCTTGCCACTGCCACCCAGGTCCAGGGTGATTAATTACATGCCTATTGCTCGCGGTGAGAAGCGCTCGGTTGAGGCT-------

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 4
lower sequence: AT5G23900.1 (Arabidopsis thaliana), 3'ss of exon 4
gttaaggtaattcagatgttccattatctattttgattgtggtaggcattttcatttctgatgaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGG
               ||    ||||    || ||  ||   ||||     |  ||||  ||       |  | |      |  |||| | | |        | |  |||  ||  ||||||||||||||||||| ||||||||||| ||||| || ||||| || |||| || | |||| ||||  || |  ||| || || | || || || ||| 
-------------gtatcaatcatttgagatcttagttagagtag-----tatatttgagacaccctcttgattcttgagttcttgt-tataacaattttgtatcttttgttttcagGCTGGTGATTCTACTCCAGAGGAGCTTGCCAATGCTACTCAAGTTCAAGGTGATTACATGCCAATTGCCAGTGTCAAGGCAGCTATGGAGCTAGTTAAGC

upper sequence: GLYMA09G34760.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv14s0006g00820.t01 (Vitis vinifera), 3'ss of exon 4
gttaaggtaattcagatgttccattatctattttgattgtggtaggcattttcatttctgatgaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGG
|| |   ||| |   ||     ||| |  ||| | ||| |   |   |      |||||  | |   ||   |||     | |||      |     | |   ||    | ||  ||||||| ||||||| |   ||||||||||||| ||||||||| || || |||  || | |||||||||| ||||||||||||||||| || ||||| ||||
gtaagtctaagttgaata----attttaaattgtaattttaacaactac-----tttcttgttacactttccatgct---tattttaaaacctctgtataaattttcaatgttacagGCTGGCGATTCTAGTGTGGAGGAGCTTGCAACTGCAACACAGGTTCAAGGTCTTTACATGCCTATTGTCAGGGAGAAGCCAACTGTGGAGCTTGTGAAGG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209716857|gb|BW679609.1|BW679609
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|17021889|gb|BM092923.1|BM092923
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     AA
genomic: --
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     AA
genomic: --
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     AA
genomic: --
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     AA
genomic: --
EST: gi|9203646|gb|BE329870.1|BE329870
EST:     AA
genomic: --
EST: gi|31457787|gb|CD399815.1|CD399815
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|6072539|gb|AW101926.1|AW101926
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|58022980|gb|CX709721.1|CX709721
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|209716856|gb|BW679608.1|BW679608
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|18718018|gb|BM523019.1|BM523019
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|192310330|gb|FK002210.1|FK002210
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|192304778|gb|FG998794.1|FG998794
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|10232707|gb|BE801595.1|BE801595
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|192304777|gb|FG998793.1|FG998793
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGAT-CTACTCCCGAGGAGCTT
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTT
EST: gi|26049048|gb|CA785501.1|CA785501
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|209714113|gb|BW679440.1|BW679440
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|209714112|gb|BW679439.1|BW679439
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|298174123|gb|HO017459.1|HO017459
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|4396384|gb|AI495381.1|AI495381
EST:     TGAAAACATACAAGGCCAAATTTGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGT
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGT
EST: gi|151412589|gb|EV282401.1|EV282401
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|21677416|gb|BQ629767.1|BQ629767
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|192296167|gb|FG989752.1|FG989752
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|58014722|gb|CX701464.1|CX701464
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|21994666|gb|BQ786194.1|BQ786194
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|21994589|gb|BQ786117.1|BQ786117
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|151412263|gb|EV282075.1|EV282075
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|192324141|gb|FK017872.1|FK017872
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|26269105|gb|CA820168.1|CA820168
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|31307515|gb|CD392718.1|CD392718
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|58014623|gb|CX701365.1|CX701365
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|13787384|gb|BG649976.1|BG649976
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|22931795|gb|BU548934.1|BU548934
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|7588772|gb|AW704560.1|AW704560
EST:     AA                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: --gttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|209719729|gb|BW669236.1|BW669236
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|192301798|gb|FG994450.1|FG994450
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|20814094|gb|BQ298572.1|BQ298572
EST:     GCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: GCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|209706116|gb|BW680860.1|BW680860
EST:     ATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAAGGTTAAG                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: ATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC-------AAGgttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|151411721|gb|EV281532.1|EV281532
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAGGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|12688109|gb|BG154445.1|BG154445
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|5058358|gb|AI736834.1|AI736834
EST:     CATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACCAGGTTAAG                         GCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
genomic: CATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACA-C-----AAGgttaaggtaa ... tttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGG
EST: gi|214009907|gb|DB989631.1|DB989631
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|14991504|gb|BI317177.1|BI317177
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|18730580|gb|BM525958.1|BM525958
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|209706115|gb|BW680859.1|BW680859
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|151393189|gb|EV263064.1|EV263064
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|7232690|gb|AW568044.1|AW568044
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|13481580|gb|BG510923.1|BG510923
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAA
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAA
EST: gi|151408035|gb|EV277850.1|EV277850
EST:     GTTGTGTTCCCAAGACGGGCACACAAGGTTAAG                    
genomic: GTTGTGTTCCCAAGACGGGCACAC------AAGgttaaggtaa ... tttat
EST: gi|9898907|gb|BE607875.1|BE607875
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|9899177|gb|BE608204.1|BE608204
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|213614480|gb|DB972804.1|DB972804
EST:     GAAAACATACAAGGCCAAANTTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: GAAAACATACAAGGCCAAA-TTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|13311622|gb|BG405273.1|BG405273
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
EST: gi|151412501|gb|EV282313.1|EV282313
EST:     TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAG                         GTTAAGGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC
genomic: TGAAAACATACAAGGCCAAATTGGTTGTGTTCCCAAGACGGGCACACAAGgttaaggtaa ... tttattgtagG------CTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGG
                                         ttgtttt  CT-rich tract
                                         ttgttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttaaggtaattcagatgttccattatctattttgattgtggtaggcattttcatttctgatgaaggttgaaatgaaagatgtttgtgtgtcatgtgacactgttgttttattgtagGCTGGTGATTCTACTCCCGAGGAGCTTGCAAATGCAACACAAGTCCAGGGTGCTTTCTTGCCTATTGTGAGGGAGAAGCCAACTGTTGAACTTGTAAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC