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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaattataaatttttggagcatctatccctttgaaatttctttacttcattcatctgtctttttactatgttgctgacatagtttataatatcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGC

Basic information

species Glycine max
transcript GLYMA09G34310.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G34310.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv02s0012g02660.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtaattataaatttttggagcatctatccctttgaaatttctttacttcattcatctgtctttttactatgttgctgacatagt---ttataatatcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGC
              |    || ||  | | | | |   ||||| |  | |    |   | |  | || | |||  |||  |  |||     || || || |    |||||| || || ||||||||||||||||| || |||||||||||||| || ||||||||||| ||||||||| | || || |||||||||||||| || || |
---------ccagcaccaatgcagactttcttcgtacaaaattccccttccagttctgtttagcattgtcctacattggagcaataacatgttttactaactcctacagATAAAAAGTCTTCTGGGGACAAAGGTTGAGTGGCTTTACTATATACTCCAGGCATTCAACTCTGGTGATTTAGTCCGCTATCAAGAATTATGCCGTGTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11413942|gb|BF426017.1|BF426017
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAAAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|19269301|gb|BM885557.1|BM885557
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|17518751|gb|BM187793.1|BM187793
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|254334177|gb|GR849095.1|GR849095
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|23726775|gb|BU761390.1|BU761390
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|298190509|gb|HO032630.1|HO032630
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTCGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|19053931|gb|BM732598.1|BM732598
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|8402724|gb|BE058358.1|BE058358
EST:     TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAN
genomic: TTCTTGGGGATAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
EST: gi|208143212|gb|GD942846.1|GD942846
EST:     CTACTTGCCCATCCTATA                         ATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG
genomic: CTACTTGCCCATCCTATAgtgagtaatt ... tcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcatctgtctttttactatgttgctgacatagtttataatatcctgaacagATTAAGAGCCTTCTGGGGACAAAGGTGGAATGGCTTTACTATATTCTGCAGGCATTCAATTCTGGTGATCTGGTACGATATCAAGAATTATGTCGGGTGC
                         tgctgac  putative branch site (score: 2)
                              acatagtttataatat  TA-rich tract