1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaataaatcttactcatctgaatatcaatgaatatatgatcgtctatatgtctaatgatttttctggacattgagggtattagggactctttgaattaatgggtttaaattacatgatatcttctgcttcttataatgaaatttgtataaagttggtaattgcattttcttgttctgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTGGATTTGGCCTCCATGGTAACTTCCTGAGGATTTTTTGTGAGAGGAAAAT
species | Glycine max |
transcript | GLYMA09G32830.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAG GTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTGEST: gi|120494761|gb|EH222928.1|EH222928
genomic: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAGgtaaataaat ... tgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTG
EST: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAG GTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTGEST: gi|7147219|gb|AW509141.1|AW509141
genomic: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAGgtaaataaat ... tgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTG
EST: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAG GTGAATCCCTATTATGATTACTAAGAGGGGATAGACTCCGATGATA-AATTEST: gi|120495101|gb|EH223268.1|EH223268
genomic: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAGgtaaataaat ... tgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGA-AGAATT
EST: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAG GTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTG
genomic: TTGAAAATCCTATATTTCATGGATTTTCAGCAGTTACTCCAAGGCCGAAGgtaaataaat ... tgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTG
ttataatgaaatttgtataaagttggtaattgcattttcttgttctgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTGGATTTGGCCTCCATGGTAACTTCCTGAGGATTTTTTGTGAGAGGAAAAT
cattttcttgttct CT-rich tract
atgaaatttgtataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataaatcttactcatctgaatatcaatgaatatatgatcgtctatatgtctaatgatttttctggacattgagggtattagggactctttgaattaatgggtttaaattacatgatatcttctgcttcttataatgaaatttgtataaagttggtaattgcattttcttgttctgtggggcagGTGAATCCCTATTATGATTACAAAGAGGTGATAGACTCCGATGAAGAATTGGATTTGGCCTCCATGGTAACTTCCTGAGGATTTTTTGTGAGAGGAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA