1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgttttgatattttaaggccaaaataattataaacttaagtttttaaaaagtgtttaaataattgaatatcatgttaatgtgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACATTGGCTTGAGCATAAAAATTTCTGCC
species | Glycine max |
transcript | GLYMA09G31170.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|8402075|gb|BE057709.1|BE057709
genomic: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCEST: gi|192302536|gb|FG996286.1|FG996286
genomic: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
EST: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAG GAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
genomic: CAAATGATACATCAAAGCATCAACTAGACAAAAAGTGCAGTGTTTGTCAGgtgagtttgt ... gtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGC
aaaaagtgtttaaataattgaatatcatgttaatgtgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACATTGGCTTGAGCATAAAAATTTCTGCC
tgttaat putative branch site (score: 3)
tgtttaaataattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttttgatattttaaggccaaaataattataaacttaagtttttaaaaagtgtttaaataattgaatatcatgttaatgtgttttgcttgtgtgctcagGAGGAGTATGAATCAGATGATGAGCTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACATTGGCTTGAGCATAAAAATTTCTGCC
tgttttg
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