1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaatgaagactggattataatatcatggtgatttgactgaatctatttgtactttagaaatgattagctatttttttcattcttacaaggcatgttcagtcacttaattgtttgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGG
species | Glycine max |
transcript | GLYMA09G31060.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAATGCTTGACAAGCTTATGGAAGGTTTTATCCGTCCTTTATCTAGAG TCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGEST: gi|23726409|gb|BU761197.1|BU761197
genomic: AACAATGCTTGACAAGCTTATGGAAGGTTTTATCCGTCCTTTATCTAGAGgtaaatgaag ... tgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTG
EST: AACAATGCTTGACAAGCTTATGGAAGGTTTTATCCGTCCTTTATCTAGAG TCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGEST: gi|208215554|gb|GE015509.1|GE015509
genomic: AACAATGCTTGACAAGCTTATGGAAGGTTTTATCCGTCCTTTATCTAGAGgtaaatgaag ... tgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATG
EST: AACAATGCTTGACAAACTTATGGAAGGTTTTATCCGTCCTTTATCTAGAG TCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCGTCATGGTTTT
genomic: AACAATGCTTGACAAGCTTATGGAAGGTTTTATCCGTCCTTTATCTAGAGgtaaatgaag ... tgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTT
ctatttttttcattcttacaaggcatgttcagtcacttaattgtttgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGG
ttaattgtttgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatgaagactggattataatatcatggtgatttgactgaatctatttgtactttagaaatgattagctatttttttcattcttacaaggcatgttcagtcacttaattgtttgttatacagTCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG