1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttcaattaagactttctaggtaaaaaatctttgatttctagaaaccaattaacagggcaatattgaccttttattgattgcacatacaatgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTACGGTTTATCGGACCCTTGGAGAGAATTATAATGAAAGGGTTTTACCTT
species | Glycine max |
transcript | GLYMA09G30410.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCG-TGCCCCACCAAATTACNEST: gi|207697115|gb|GD679966.1|GD679966
genomic: TCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACC-AATTACC
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|26059988|gb|CA802902.1|CA802902
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|33388681|gb|CA851888.1|CA851888
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|13562892|gb|BG551112.1|BG551112
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGTAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCTTTGCCCAACCAATTACCTEST: gi|13563054|gb|BG551274.1|BG551274
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGTAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCTTTGCCCAACCAATTACCTEST: gi|13563055|gb|BG551275.1|BG551275
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGTAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCTTTGCCCAACCAATTACCTEST: gi|151410209|gb|EV280024.1|EV280024
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|151411498|gb|EV281309.1|EV281309
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|192325059|gb|FK016170.1|FK016170
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|254318421|gb|GR832589.1|GR832589
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATG GTGGAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTEST: gi|57574895|gb|CX547870.1|CX547870
genomic: CACGACCCCATCTAGTTGAGAGTACATCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
EST: TCTGGGAGTCGTGATCTACAGATG GTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
genomic: TCTGGGAGTCGTGATCTACAGATGgtaaataata ... tgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCT
ccaattaacagggcaatattgaccttttattgattgcacatacaatgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTACGGTTTATCGGACCCTTGGAGAGAATTATAATGAAAGGGTTTTACCTT
ttttattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcaattaagactttctaggtaaaaaatctttgatttctagaaaccaattaacagggcaatattgaccttttattgattgcacatacaatgttatacagGTGAAAATTGGACTTCGAGTTCTTACTCGCCCGTTGCCCAACCAATTACCTACGGTTTATCGGACCCTTGGAGAGAATTATAATGAAAGGGTTTTACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - -gaaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatac