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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatttcttaataatcttttcttcctatttttttagttctagatttgagacagttagaaccttcaatcattcaattctctgaattaattgtttaaatgattttgcagAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAAT

Basic information

species Glycine max
transcript GLYMA09G29810.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G29810.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv17s0053g00780.t01 (Vitis vinifera), 3'ss of exon 4
gtaagaatttcttaataatcttttcttcctatttttttagttctagatttgagacagttagaaccttca-atcattcaattctctgaattaattgtttaaatgattttgcagAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAAT
                       |       |||| |   ||   |||||    ||||   |  |||    |||||    |  || |  ||  ||   |  | | |||||||||||| ||||||||||||||||| || |||||  ||||||| |||||| |||| ||  |||| || |||||||||||| | || || |||||  | ||| 
----------------------gtgagtgagttttatcgatt--ggatttt---cagtctcattctttgtgtcatttttgtgcctaagata--tgaccagtttagtttgcagAACAAATGGATGGAGCTATTTCCGACAATTGTTTCAATGGCGAGAACACTTGAAGTATTATCATCCGGAATGATGGGTGGTCAGAGCGGTTCCCTTCAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagaaccttcaatcattcaattctctgaattaattgtttaaatgattttgcagAACAAGTGGATGGAGCTATTTCCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTAGCCATAGTGGTTCTTTGCAAT
                             aattaat  putative branch site (score: 3)
                           tgaattaattgtttaa  TA-rich tract