1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aggtagttttgttggtttctcaactttgcagttactgatattgcttttaccattgaagctctgttcaaatattctaaagatattttttgttcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGCAATTGGTTGTAGTTATAAAGTTGAGCGGTGCTGCATCGTAAAG
species | Glycine max |
transcript | GLYMA09G28530.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATT CCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGEST: gi|193331011|gb|FK294137.1|FK294137
genomic: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATTgtatgtcctt ... tcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTG
EST: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATT CCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGEST: gi|193393523|gb|FK359753.1|FK359753
genomic: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATTgtatgtcctt ... tcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGG
EST: CTGTACAAGAGTTGCGTACAACCATTCAAGTGCTACCTCCGCAAGATT CCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGEST: gi|27426799|gb|CA938319.1|CA938319
genomic: CTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATTgtatgtcctt ... tcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTG
EST: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATT CCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTG
genomic: GGCTGTACAAGAGTTGCGCACAACCATTCAAGTGCTACCTCCGCAAGATTgtatgtcctt ... tcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTG
tttaccattgaagctctgttcaaatattctaaagatattttttgttcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGCAATTGGTTGTAGTTATAAAGTTGAGCGGTGCTGCATCGTAAAG
ttctaaa putative branch site (score: 2)
ttttttgttc putative PPT
ttcaaatattctaaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggtagttttgttggtttctcaactttgcagttactgatattgcttttaccattgaagctctgttcaaatattctaaagatattttttgttcaacttcagCCTATATTTCTACTCTGAGAAACAATGTACGTTCCCGTGCTTGGGGTGCTGCAATTGGTTGTAGTTATAAAGTTGAGCGGTGCTGCATCGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - gttggtt
- - - - - - - - - - - -ctttgca
- - - - - - - - - - - - - - - gttactg