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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccttatatgtttaagtaaaaatcagcctctggtttttcctcattagttgtctctaatatatatgtaatattacttgtttgatgttgcatggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG

Basic information

species Glycine max
transcript GLYMA09G25070.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209720878|gb|BW662604.1|BW662604
EST:     CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAG                         GAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
genomic: CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaat ... tggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
EST: gi|58022034|gb|CX708775.1|CX708775
EST:     CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAG                         GAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC
genomic: CAAAGCTTGCTAACATTTTACATGCCAATGAACTTGCTAGACGTCTTAAGgtatgctaat ... tggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagttgtctctaatatatatgtaatattacttgtttgatgttgcatggtgatcagGAAGATGGGGTAGATATTACTGCTAATTCTCTTCATCCAGGAGCCATTGCCACCAATATCCATCGTTACAATAGTGTATTGACTG
          taatatatatgtaata  TA-rich tract