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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacattttttcttgtcatcactcatcataatattagaaacttgtttacagtatttttcttcagtctacttatagaaactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA

Basic information

species Glycine max
transcript GLYMA09G24970.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G24970.1 (Glycine max), 3'ss of exon 5
lower sequence: LOC_Os02g44642.1 (Oryza sativa), 3'ss of exon 5
-tacattttttc---ttgtcatcactcatcataatattagaaacttgtttacagtatttttcttcagtctacttatagaaactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
  ||||| |      || |    |||   | |    ||  |  | ||  | |  | |||   || |   ||  |||| |  ||    | | || |   |||||||| |  || || ||||| ||||| |||||||||||| |||| || |||||  ||||||| || || || ||||| |||||||||||||  ||||| || |
ccacattctgcagaattttacgaacttcacttttgcttgcactcctgactcctctgtttactttaaaaataactataca--ctatccatttattca--aaacagGTTGATGATAAACTTTATATATACCTGGAGTATGTTTCTGGTGGATCCATCCATAAACTACTCCAGGAGTATGGGCAATTTGGTGAACCTGCTATCCGCA

upper sequence: GLYMA09G24970.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G175504_T01 (Zea mays), 3'ss of exon 4
-----tacattttttcttgtcatcactcatca-taatattagaaacttgtttacagtatttttcttcagtctacttatagaaactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
     | ||      |||||||    |||| | ||   |||   |    ||      ||||||   || |  ||||||| |   || |       |||  ||  |||| |  || || |||||||||||| |||| |||||| |||| || |||||| |||||||||| ||||||||||||||  ||||||||| ||| || || |
gagagttcacaacagcttgtcacatatcattaatagggttatggatgcattattttcatttttaggca-tgaacttatacattatgtttg-----cccaaaattagGTTGAAGATAAACTTTACATATATTTGGAATATGTTTCTGGTGGATCCATACATAAACTTCTACAAGAATATGGACAGCTTGGTGAACCAGCAATACGCA

upper sequence: GLYMA09G24970.1 (Glycine max), 3'ss of exon 5
lower sequence: AC209208.3_FGT001 (Zea mays), 3'ss of exon 4
------tacattttttcttgtcatcactcatcataatattagaaacttgtttacagtatttttcttcagtctacttatagaaactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
       ||||| |||  ||     |   |  | |    |||  |||| |   || |   | |  | | ||| || |  | | || |   ||  |     ||| |||| |  || |||||||||||||| |||||||||||| |||| || || ||| |||| ||||| ||||| |||||||| |||||||||| ||| ||| | |
tagaatcacattcttttctggatggagggagtaca----tagttacttttcccca-tgcatcttgtgattcttctaaatgcatct-ccatatattatacaaaatagGTTGATGATAAGCTTTACATATACCTGGAGTATGTTTCTGGTGGATCTATACATAAGCTTCTCCAAGAGTATGGACAGTTTGGTGAACAAGCCATTTGCA

upper sequence: GLYMA09G24970.1 (Glycine max), 3'ss of exon 5
lower sequence: GRMZM2G093316_T01 (Zea mays), 3'ss of exon 5
tacattttttcttgtcatcactcatcataatattagaaacttgtttacagtatttttcttcagtctacttatagaa-actgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
|| | ||    |  |  |    |   |  |  |    |  |  ||| |   ||   ||||  |  || |   |  | |   |   || ||     |||||||| |  || |||||||||||||| |||||||||||| |||| || || ||| |||| ||||| ||||| ||||| || ||||||||||  || ||||| |
tagaattgcattcttttttggacggaagga-gtacatagttatttttcctcatgcatcttgtgattattcgaaatacatctccatattatattgaaaacagGTTGATGATAAGCTTTACATATACCTGGAGTATGTTTCTGGTGGATCTATACATAAGCTTCTCCAAGAGTATGGTCAGTTTGGTGAACAGGCCATTCGCA

upper sequence: GLYMA09G24970.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv16s0050g00770.t01 (Vitis vinifera), 3'ss of exon 4
tacattttttcttgtcatcac-tcat-cataatattagaaacttgtttacagtatttttcttcagtctacttataga---aactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
     |||    | |  |  | ||||    |||||||       |||  || | ||  |  ||    |   ||  ||   |||  |  ||| || || | ||||||| || ||||| ||||| |||||  ||||||||||  |||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||| |||||||
-----tttgcaatattgttgcatcatgtgcaatattatgtttcagttggcacttttggttatcgtcttttgtactgatataacctcccaattattccatgaacagGTTGGTGACAAACTTTATATATACTTGGAGTATGTATCTGGTGGCTCCATCTATAAACTTCTTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacagtatttttcttcagtctacttatagaaactgctgaatcatcccttaaacagGTAGGCGACAAGCTTTACATATATCTGGAGTATGTTGCTGGAGGCTCCATATATAAACTTCTTCAAGAATATGGACAATTTGGTGAACTAGCTATTCGTA
                                        tcatccctt  CT-rich tract
     tatttttctt  TA-rich tract