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...taaacactcgtgatcaagacattaatcattaagttatttttactctgacatttgatgtttggatttattctaataaatttatctgttgcactttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAAAATTTAAGCCAA
species | Glycine max |
transcript | GLYMA09G24440.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAG GCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAEST: gi|298171116|gb|HO016148.1|HO016148
genomic: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAGgtgtgaaaag ... ctttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAA
EST: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAG GCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAEST: gi|298199415|gb|HO042778.1|HO042778
genomic: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAGgtgtgaaaag ... ctttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAA
EST: AAGATGGATGATTCTTTACTTGGTGAAGGCTTAGCTCTCCTCAGTAATAG GCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAEST: gi|8826769|gb|BE210499.1|BE210499
genomic: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAGgtgtgaaaag ... ctttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAA
EST: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAG GCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCANA
genomic: AAGATGGATGATTCTTTATTTGGTGAAGGCTTAGCTCTCCTCAATAATAGgtgtgaaaag ... ctttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAA
tgacatttgatgtttggatttattctaataaatttatctgttgcactttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAAAATTTAAGCCAA
ttctaat putative branch site (score: 2)
atgtttggatttattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacactcgtgatcaagacattaatcattaagttatttttactctgacatttgatgtttggatttattctaataaatttatctgttgcactttatgtagGCTGTTCCAGCTAAATTGGTTGCAGAAAGATGGTTTCATATATGAGCCAAAAAATTTAAGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - caagaca
- - - - - - - - - - - - - - - - - - - - - -tctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgttgc