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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttaaagattctcaagctacagtcactccattccttgcaatgtatttattaagttcattttggaaaaatattaccagGATGCATTACGAGCGGCTGATTTAAGTGATTATAGTCTGCAAACAAGGGAGTCTTTGTCTTGTTGGTATCCTGACTGTATTGGTTTTAACCTCATTCAAT

Basic information

species Glycine max
transcript GLYMA09G18490.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 4
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 9
gtatttaaagattctcaagctacagtcactccattccttgcaatgtatttattaagttcattttggaaaaatattaccagGATGCATTACGAGCGGCTGATTTAAGTGATTATAGTCTGCAAACAAGGGAGTCTTTGTCTTGTTGGTATCCTGACTGTATTGGTTTTAACCTCATTCAAT
|||| || | |      |    |||   ||  | ||  | ||   ||  |  | | ||| ||||     | |   | ||||| ||| |  |||| ||||| || |  || | ||| |   | ||  | |||||||| ||||||||||||||||| || |||||||||||||||||  |||
gtatctagaaaaa---gaatatcagcagcttaactc--tacatgttaggtcctcatttctttttccctta-tgcaaacagGACGCACTGAGAGCAGCTGACTTCAAGGAGTTTAGCCCTGAGACTCGAGAGTCTTTATCTTGTTGGTATCCTGATTGCATTGGTTTTAACCTCATAGAAT

upper sequence: GLYMA09G18490.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 9
gtatttaaagattctcaa--gctacagtcactccattcc---ttgcaatgtat----ttattaagttcat----tttggaaaaatatta-ccagGATGCATTACGAGCGGCTGATTTAAGTGATTATAGTCTGCAAACAAGGGAGTCTTTGTCTTGTTGGTATCCTGACTGTATTGGTTTTAACCTCATTCAAT
||||| |||  || | ||  | | | ||  || |||| |   ||  | | |      | | ||| ||  |     ||    |||||||| | |||||||| |  ||||  ||||||| |  |||||||| |  |||||   ||| |||||||| |||||| |||||||||| |||||||||||||||||  || 
gtattcaaaatttttgaaaggtttctgtttcttcattgcattttctagtatcccctgtcactaattttttgtttctttttcaaatattaactagGATGCACTCAGAGCTACTGATTTCAAGGATTATAGCCCACAAACTCAGGAATCTTTGTCCTGTTGGAATCCTGACTGCATTGGTTTTAACCTCATAGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactccattccttgcaatgtatttattaagttcattttggaaaaatattaccagGATGCATTACGAGCGGCTGATTTAAGTGATTATAGTCTGCAAACAAGGGAGTCTTTGTCTTGTTGGTATCCTGACTGTATTGGTTTTAACCTCATTCAAT
                aatgtatttattaagt  TA-rich tract