1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aatttttctttgctaaacttcaaacaattttgtatggctaaattaagctttcacttatttctatgaaaaatggcttaagtccagtttgtctaatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
species | Glycine max |
transcript | GLYMA09G11960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|151409781|gb|EV279589.1|EV279589
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG GCAAATAGCGGACAAAATACCAATGGGTGTCAGEST: gi|192325817|gb|FK018039.1|FK018039
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|298167097|gb|HO010536.1|HO010536
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|15286510|gb|BI470401.1|BI470401
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|298172912|gb|HO019896.1|HO019896
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTAGCCTTCTGTCAATG GCAAATAGCGGACAAAATACCAATGGGTGTCAGEST: gi|193693132|gb|FK633737.1|FK633737
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|15814116|gb|BI786391.1|BI786391
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|192320580|gb|FK011990.1|FK011990
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|298182560|gb|HO031295.1|HO031295
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACAGCCAAACACACTGGTCCTGGCCTTCCGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|17023477|gb|BM094511.1|BM094511
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAGEST: gi|208125827|gb|GD922033.1|GD922033
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: GATAGAAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG GCAAATAGCGGACAAAATACCAATGGGTGTCAGEST: gi|298188736|gb|HO035429.1|HO035429
genomic: GAT-G-AAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATG GCAAATAGCGGACAAAATACCAATGGGTGTCAGEST: gi|10847406|gb|BF070093.1|BF070093
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
EST: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCGATG GCAAATAGCGGACAAAATACCAATGGCTGTCAG
genomic: ATGATGAAAACTTTACGGCCAAACACACTGGTCCTGGCCTTCTGTCAATGgtatgtgttt ... taatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
agctttcacttatttctatgaaaaatggcttaagtccagtttgtctaatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
gtctaat putative branch site (score: 3)
tttgtct CT-rich tract
ttatttctatgaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatttttctttgctaaacttcaaacaattttgtatggctaaattaagctttcacttatttctatgaaaaatggcttaagtccagtttgtctaatctgcagGCAAATAGCGGACAAAATACCAATGGGTGTCAG
- - - - - -gctaaac
- - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaat