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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagaaatagatcaatatcatgtattcaattattaatgttaaatattccaggttcatagtttagaggatactaactctgccctatcctctggttgtgatagGTCTGAGAGCAGCATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA

Basic information

species Glycine max
transcript GLYMA09G09350.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G09350.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g00920.t01 (Vitis vinifera), 3'ss of exon 5
------gtaaagaaatagatcaatatcatgtattcaattattaatgttaaatattccaggttcatagtttagaggatactaactctgcccta---tcctctggttgtgatagGTCTGAGAGCAGCATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA
         | || | |    ||| | || | |    ||| |   |  |   || ||   || ||   | |||   |  | | | || | |    || |||| |  ||  |||||||| || |||||||| ||  | || ||| |||  || ||||   |||| || ||||| || |    ||||||||||| |||||||||||||||||||
gtatgaactatgagaaaacaaaattttatttgtcttcttagtccag--aggcatgccgtttttattagtcagaaatt--tgattttggctttcattcatctgttgttgcaagGTCTGAAAGAAGCATACAAAGGTTGATTAAGCTGCGGAACTCTGTTGTGCGGTCTTATCAGGAATGTGGAATTCCAACTGGTTGGATGCTTGATTCAGGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192328412|gb|FK020123.1|FK020123
EST:     GAAATTCCATGTGGAGCTTCCTTGAGAAAGATGGCCAGCCTATTAGACAA                         GTCTGAGAGCAGCATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCG
genomic: GAAATTCCATGTGGAGCTTCCTTGAGAAAGATGGCCAGCCTATTAGACAAgtaaagaaat ... gttgtgatagGTCTGAGAGCAGCATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccaggttcatagtttagaggatactaactctgccctatcctctggttgtgatagGTCTGAGAGCAGCATACAGAGACTAATCAAGTTGCAAAATTCTGCAATGCGTTCATATCAAGAGTACAAAATTCCAACTGCTTGGATGCTTGATTCAGGA
                      tactaac  putative branch site (score: 0)
         atagttta  TA-rich tract