1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ggcacacaagtacttcgttgagtacattgccaaagcttatcaagctcttacagatccaactgcctatgtaactgatatatttttattccttttattttagAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGG
species | Glycine max |
transcript | GLYMA09G08830.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTNTAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAG AGGCACACAAGTACTTCGTTGEST: gi|193499753|gb|FK462206.1|FK462206
genomic: GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTG
EST: TATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAAGATCCAG AGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTEST: gi|193702686|gb|FK638726.1|FK638726
genomic: TATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCC-AGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTT
EST: GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAG AGGCACACAAGTACTTCGTTG
genomic: GTATAGGCGACTTTCTATTCAATACCATCCAGATAAAAACCCAGATCCAGgttgaaggtg ... tttattttagAGGCACACAAGTACTTCGTTG
tcttacagatccaactgcctatgtaactgatatatttttattccttttattttagAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGG
aactgat putative branch site (score: 3)
tatttttattcctttt CT-rich tract
tatgtaactgatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcacacaagtacttcgttgagtacattgccaaagcttatcaagctcttacagatccaactgcctatgtaactgatatatttttattccttttattttagAGGCACACAAGTACTTCGTTGAGTACATTGCCAAAGCTTATCAAGCTCTTACAGATCCAACAGCTCGTGAAAATTATGAAAAATATGGCCATCCTGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- cacacaa
- - - - - - - - - - - - cattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tccaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctatgt