1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaacagttcttacttcaaacctttccaccagacatcagaattcatgactttccaatttctgttctgatgcgaatgttggtattttgtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGTCAATGCGGCCTTTTTGGCTGCCCTATATAGTGATTATCTTGATGCTGC
species | Glycine max |
transcript | GLYMA09G02160.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCATGTGCTCCTATCTACCAGGTTTT-ACAAGCTNTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|37994320|gb|CF806066.1|CF806066
genomic: ATCATGTGCTCCTATCTACCAG-TTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|16106049|gb|BI893789.1|BI893789
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCATAT-CTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|26048689|gb|CA785142.1|CA785142
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|5605872|gb|AI899970.1|AI899970
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|14990101|gb|BI315774.1|BI315774
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATEST: gi|207811648|gb|GD784017.1|GD784017
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCAT
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|7588237|gb|AW704037.1|AW704037
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|33389935|gb|CA853142.1|CA853142
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCEST: gi|6454405|gb|AW185088.1|AW185088
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTC
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|21888159|gb|BQ741372.1|BQ741372
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|22525618|gb|BU084429.1|BU084429
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: GTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAG GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGEST: gi|21637832|gb|BM107987.1|BM107987
genomic: GTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
EST: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAR GTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
genomic: AATCATGTGCTCCTATCTACCAGTTTTCACAAGCTTTAACAGAACCAAAGgtaacagttc ... gtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGG
ttcatgactttccaatttctgttctgatgcgaatgttggtattttgtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGTCAATGCGGCCTTTTTGGCTGCCCTATATAGTGATTATCTTGATGCTGC
ttctgat putative branch site (score: 3)
tattttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacagttcttacttcaaacctttccaccagacatcagaattcatgactttccaatttctgttctgatgcgaatgttggtattttgtgagcccagGTGGCTTGATTCAATTAAACCATGGTAGGCCTCAGCCTCTCCAATATGTGGTCAATGCGGCCTTTTTGGCTGCCCTATATAGTGATTATCTTGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC