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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtagaaaaataaacatgtgccattgtgttatcttaatgctgctgttgggataaagtaattatctctaattactgtatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCACGGATCCTTAGGAAGCACTTCAGGGGAAAGCCATATTACATTGATCTTC

Basic information

species Glycine max
transcript GLYMA09G01820.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13180801|gb|BG352141.1|BG352141
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCGACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|192297466|gb|FG992694.1|FG992694
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|193645084|gb|FK593384.1|FK593384
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAA
EST: gi|192325137|gb|FK017523.1|FK017523
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATACTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|6567264|gb|AW234875.1|AW234875
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|7028813|gb|AW458596.1|AW458596
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|8826734|gb|BE210464.1|BE210464
EST:     ATAACTCTCACACACACCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|213591397|gb|DB973830.1|DB973830
EST:     ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
EST: gi|207755571|gb|GD726624.1|GD726624
EST:     ATAACTCTCACACACGTCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAG                         GTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA
genomic: ATAACTCTCACACACGCCGCGGCCAGCCATGCTGGTTTAGAGTGCCCAAGgtttgtagaa ... tatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttaatgctgctgttgggataaagtaattatctctaattactgtatggtgtagGTTGGAATGATTGCAGCCAATGATGGAGTTCTACTAAGAAACCATATTCCACGGATCCTTAGGAAGCACTTCAGGGGAAAGCCATATTACATTGATCTTC
                                 ctctaat  putative branch site (score: 3)
                    ataaagtaattatctc  TA-rich tract