1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...attttcatatcagctcttttgatcatctactattttgatacttttatataacattatatctcatgcaatgtagtttcataggatgttttgaactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT
species | Glycine max |
transcript | GLYMA08G45960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATEST: gi|51341167|gb|CO982484.1|CO982484
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATEST: gi|254331676|gb|GR846093.1|GR846093
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATEST: gi|120530846|gb|EH258979.1|EH258979
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATEST: gi|254331675|gb|GR846092.1|GR846092
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATEST: gi|26047413|gb|CA784215.1|CA784215
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
EST: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCA GTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
genomic: TTCAAAAGTGCCCTTCATTAGCAATGCAATCATGAAGGCTACTGGCTGCAgtatgtactt ... aactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATAT
atataacattatatctcatgcaatgtagtttcataggatgttttgaactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT
atataac putative branch site (score: 3)
acattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttcatatcagctcttttgatcatctactattttgatacttttatataacattatatctcatgcaatgtagtttcataggatgttttgaactctgcagGTTCATTCAACCTGTTGGTCAACAATGGGGCAGCTGCAGGCCAAGTAATATATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - -catatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttttg