Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

Basic information

species Glycine max
transcript GLYMA08G45770.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 4
ttattaatttttaatagtgtaatgcatttgttgttatat--caggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
   |  || ||||| |   | |    |   | ||||| |  ||  |  ||    |  |   |||    |    ||| |||  ||| | |  |      ||||| || || ||||||||||||||||| |||||| |||| ||||| || || ||||| || ||||| ||||||||||||| ||| ||||||||| | |||||
--gtagatgtttaagatgcttacatttgaatggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactg-----acagGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 4
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                ||  || |  | | ||  |||    |   |    || ||| |     | |   || |   | || |  ||  ||   ||  |||| || |||||||||||||| ||||| |||||| |||| ||||| ||||| |||||||| ||||| ||||| |||||||  ||||| |||||| | |||||
----------------gtaaaaaggctctatttctattattgactttcggatattcatgcccttgct--ctgaccatattat-gttacttgtatgg-cagGCACACCTTGCTTCCGTGGGTATGGCAGGCGTGATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTCAGCCAGGACCTATCTGTTATTAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T06 (Zea mays), 3'ss of exon 3
ttattaatttttaatagtgtaatgcatttgt-tgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
 |  |  |   ||   || ||  |  ||  | |||    |    | || |||   ||||||      |  || || |     ||   | | | ||    ||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||| |||||| |||||| | |||||
-ttctgctccataggggtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 4
ttattaatttttaatagtgtaatgcatttgt-tgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                || ||  |  ||  | |||    |    | || |||   ||||||      |  || || |     ||   | | | ||    ||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||| |||||| |||||| | |||||
----------------gtatagagacttcctatgtccagtgtactctcaacaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T02 (Zea mays), 3'ss of exon 3
ttattaatttttaatagtgtaatgcatttgttgttata-tcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                || ||  |  ||  |  ||| | |    | ||  ||   ||||||      |  || || |     ||   | | | ||    ||| ||||| ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||| |||||| |||||| | |||||
----------------gtatagagacttcctatttacagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGGACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G851698_T01 (Zea mays), 3'ss of exon 4
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT-----------------------------------------------------------------------
                                                                        || |     ||   | | | |||   ||| ||||| |||||||| || ||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||| |||||| |||||| | |||||                                                                       
-----------------------------------------------------------------------tatctgaacatttgatatgaattgtgtaggcactccctgcttccgcggttatggcaggcgtaatggtgagcgcaggaggaagtctgtccgtggttgtattGTGAGCCAAGACCTATCTGTTATCAACTTGGTAATTGTTAAGAAGGGTGAGAACGATCTGCCTGGTTTAACTGACACTGAGAAGCCAAGGATGAGGGGTC

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 4
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttac---ttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                || ||  |  | | |    ||   |  | || |||    || || |        |  || |||    ||||| ||    |||   ||| ||||| |||||||| || ||||| ||||||||||| ||||| ||||| |||||||| ||||| || ||||| |||| |||||| |||||| | |||||
----------------gtatatagactgtatctccattgtac-tctcaacaccccctcttttacctgtggttcttatctgaacatttgatatgaattgtgtagGCACTCCCTGCTTCCGCGGTTATGGCAGGCGTAATGGTGAGCGCAGGAGGAAGTCTGTCCGTGGTTGTATTGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 3
ttattaatttttaatagtgtaatgcatttgt-tgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
    || |   ||   || ||  |  ||  | |||    |    | ||  ||   ||||||      |  || || |     ||   | | | ||    ||| ||||| ||||||||||| ||||| ||||||||||  ||||| ||||| || ||||| ||||| ||||| || |||| |||||| |||||| | |||||
-ctctactccataggggtatagagacttcctatgtccagtgtactctcagcaccatcttttactctgattcttatctgaacattcgatatcaattctgtagGCACTCCCTGCTTCCGTGGTTATGGCAGGCGTAATGTTGAGCGCAGGAGGAATTCTGTCCGTGGTTGCATCGTGAGCCAAGACCTATCTGTTATCAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 4
----------ttattaatttttaatagtgtaatgcatttgttgttatatcaggt--gtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
           || ||  ||||  ||   |  ||||| | |  |    |    |  || |   | |   |||  ||  | | |||  || |||     |  |   ||||||||||||||||||||| | ||| |||||||| | | ||| ||| | || ||||||||||||||||| |||||||| ||||| || ||||||||| ||||| |
gtaactaaacataataccttttcttacacttttgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgttt---cgtaatgggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------------------------------------------------------ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttctt--ttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                                                                   ||    |||||     || ||      | |||  | | ||   | ||| ||||| ||   |  |  |  ||   | |     ||    | || |||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||| |||||||| ||||  |||||||| |||||||||||
gttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgt-tagcattgtggttaatttgtctcat-tctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGATGCATTGTTAGCCAGGACCTCTCAGTTTTGAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 4
-----------------ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                  |  ||||  |||| |    |   ||    ||   |  |||  | | ||       ||  |||||  |  |   || |  |||||   ||| |||| |||| || || |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||
gtgagtaaactgggactgttctaatccttaaaaactgatcacaaccctta--agttcatatttttatgcaag-ttgggtctatgagatttattacactttatgc-ttatttgagcagGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------ttattaatttttaatagtgtaatgcatttgttgttat-atcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                                           ||  ||       |||   | |||| | ||| ||  | || || |       || |  |   |      | |      || || || || ||| | ||||||| |||||||| || |||||||| ||||||||||||||| | ||||| ||| |||| |||||||||||||||||||  ||||| |||||| |||||||
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggccagttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagtt-ttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 3
-------------------------------------------ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttct-----ttttatttgttacttg---aacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                            |   |    |   || ||  || |   | | ||  |      |   |  | |   | |   ||| || |||||||  |     || || ||| |  ||      ||||     |||||||||| ||||| || ||||| || || ||||||||| ||||||| ||| | ||||||||||| || || |||||||| ||  ||||| |
gtacaatattgattaattggaacctcatggtctgaagttgtgcctgcaaggaatccgtactg-gatacgcgtctcgtcgtcatgcattcttgtactgcatgtca-ctaaaatctaatttcttaacgattgtacttgatgttttctcggcagGTGTCTCTTGCTTCCGAGGATACGGGAGGCGCAACGGCGAGCGTAGGCGAAAGTCCGTTAGAGGGTGCATTGTGAGTCCCGACCTCTCAGTGCTGAACCT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 4
lower sequence: EFJ14726 (Selaginella moellendorffii), 3'ss of exon 3
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttact--tgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                || | |   | ||  |   ||||||||| ||      |   |||  || | |||||  | |  ||| ||||     ||||||| ||||| |||||  | ||  |||| ||||| ||||| ||||| |||||||| |||||||||||||  || || |||||| | ||  |
--------------------------------gtaaaac--gatgcttcttttttcttttctc------cctctttcgttctgatttgagattcgtgaccagGCGACACTTGCTTTCGTGGGTATGGGCGACGCGATGGTGAGCGGAGGAGGAAGTCAGTTCGTGGTTGCATTGTCAGCCATGATCTGTCTGTTCTCAATCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306899|gb|FK002621.1|FK002621
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|208080862|gb|GD873774.1|GD873774
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|26058968|gb|CA801882.1|CA801882
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|254318039|gb|GR832207.1|GR832207
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|298165755|gb|HO008726.1|HO008726
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193389075|gb|FK356284.1|FK356284
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|5753653|gb|AI960940.1|AI960940
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193553684|gb|FK508613.1|FK508613
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|4436991|gb|AI522856.1|AI522856
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|151413141|gb|EV282949.1|EV282949
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|209703578|gb|BW678280.1|BW678280
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192306900|gb|FK002622.1|FK002622
EST:     TTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: TTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192332922|gb|FK025019.1|FK025019
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192333814|gb|FK025075.1|FK025075
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192319434|gb|FK005874.1|FK005874
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|16106410|gb|BI894150.1|BI894150
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|151396097|gb|EV265974.1|EV265974
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193706280|gb|FK645820.1|FK645820
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTT-G-CTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|5605874|gb|AI899972.1|AI899972
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|213594190|gb|DB963787.1|DB963787
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192332467|gb|FK024228.1|FK024228
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|213597920|gb|DB958301.1|DB958301
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192319433|gb|FK005873.1|FK005873
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193555522|gb|FK515967.1|FK515967
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|298171428|gb|HO016460.1|HO016460
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|298180050|gb|HO025265.1|HO025265
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|213603401|gb|DB970470.1|DB970470
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192327797|gb|FK022398.1|FK022398
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|208301771|gb|GE099001.1|GE099001
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|151412215|gb|EV282027.1|EV282027
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATGTGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193458142|gb|FK422482.1|FK422482
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGG
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGG
EST: gi|213607341|gb|DB957149.1|DB957149
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|151413002|gb|EV282810.1|EV282810
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|209714918|gb|BW682083.1|BW682083
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|208242762|gb|GE038834.1|GE038834
EST:     GAAGCAGGGTGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGGA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|193614812|gb|FK562822.1|FK562822
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|298195035|gb|HO043563.1|HO043563
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAGTGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|192332466|gb|FK024227.1|FK024227
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
EST: gi|298172900|gb|HO019884.1|HO019884
EST:     GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGG                         GAACTCCTTGCTTTCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA
genomic: GAAGCAGGGAGTGCTGACTCCTGGTCGTGTTAGACTTTTGCTTCACAGGGgtatgatgta ... acttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                      aactaat  putative branch site (score: 2)
                            ttttctttttatttgt  CT-rich tract
                  tacaaactaattttct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttattaatttttaatagtgtaatgcatttgttgttatatcaggtgtctacattttcttttgtctacaaactaattttctttttatttgttacttgaacagGAACTCCTTGCTTCCGTGGATATGGAAGGCGTAATGGAGAGCGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

- - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - gtgtcta
- - - - - - - - - - - - - - - - - - - - - - gtctaca