1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...aattcattgggtagcaagataaggaaaaatatatgacattttaattttcttaatgaaaatatgtggccgttcttgtacttatgttgtgatgtttaatcagATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGA
species | Glycine max |
transcript | GLYMA08G45270.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTG ATGCTTTTGATACTAAGCAATTACTACGTGTTATGGACAAGTTGAAGCATGEST: gi|15200732|gb|BI424501.1|BI424501
genomic: GACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGgtcagtacta ... gtttaatcagATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATG
EST: GACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTG ATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGATGAAGCATG
genomic: GACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGgtcagtacta ... gtttaatcagATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATG
tttcttaatgaaaatatgtggccgttcttgtacttatgttgtgatgtttaatcagATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGA
tcttaat putative branch site (score: 3)
taatgaaaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcattgggtagcaagataaggaaaaatatatgacattttaattttcttaatgaaaatatgtggccgttcttgtacttatgttgtgatgtttaatcagATGCTTTTGATACTAAGCAATTACTACATGTTATGGACAAGTTGAAGCATGGCGAAGCAGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGA
- - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtg