1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaaaaagttaaatgatatgatcttctgaataacaaattatgtataattaactgcattgggacataacttgttgacttacagtccttcaatatattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCC
species | Glycine max |
transcript | GLYMA08G43590.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|193446819|gb|FK411782.1|FK411782
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|207691950|gb|GD673867.1|GD673867
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208208007|gb|GE003000.1|GE003000
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208257736|gb|GE055331.1|GE055331
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|193535466|gb|FK492136.1|FK492136
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208067987|gb|GD861833.1|GD861833
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|193358257|gb|FK322797.1|FK322797
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|207685440|gb|GD668170.1|GD668170
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|207765682|gb|GD735927.1|GD735927
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|207780476|gb|GD751697.1|GD751697
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208316178|gb|GE117418.1|GE117418
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208150564|gb|GD949447.1|GD949447
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|193373866|gb|FK341156.1|FK341156
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCEST: gi|208173943|gb|GD966826.1|GD966826
genomic: CTGAGGTTCTGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
EST: GAGGTTACTAGAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAG GATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
genomic: GAGGTT-CT-GAGGCGTATCTGGGAGTACATTAAAGTCAACCAGCTAGAGgtaagcaata ... atattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATC
attaactgcattgggacataacttgttgacttacagtccttcaatatattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCC
gacttac putative branch site (score: 2)
tattcct putative PPT
ttcaatatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaaagttaaatgatatgatcttctgaataacaaattatgtataattaactgcattgggacataacttgttgacttacagtccttcaatatattcctagGATCCTGCGAATCCTATGGCTATAGTGTGTGATGGGAAGCTTCAGGAGATCTTTGGCTGTGAAAGCATTTCGGCATTGGGGATACCTGAAGTTCTGGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
aaaaaag
- - - - - - tgatatg
- - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgac