1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tcatctgcacaatttcactctttttcccccccttttctttccacctagaagcttgattttcctgacattgacatatttgcttgccctatgttacttgcagCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAG
species | Glycine max |
transcript | GLYMA08G43490.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAG CTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGEST: gi|10232940|gb|BE801828.1|BE801828
genomic: GGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGgtatttttac ... ttacttgcagCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTG
EST: GGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAG CTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCCTGT-
genomic: GGCTATTGAAGGTGTGCAACCTGCAATTCCTGAAAATGCTCCAGTTGAAGgtatttttac ... ttacttgcagCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCC-TGTT
tagaagcttgattttcctgacattgacatatttgcttgccctatgttacttgcagCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAG
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatctgcacaatttcactctttttcccccccttttctttccacctagaagcttgattttcctgacattgacatatttgcttgccctatgttacttgcagCTCCCTCCGAGATAAGAAAATCTGAATATAAGGAAGATGGGCTTCCTGTTGATGTTAAATTACCTGTTAAACATTTAATAACAAGGGAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - -tgcacaa
- - - - - - - - - - - - -ccccccc
- - - - - - - - - - - - - - - - - - - ttccacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgccc