1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtcagtttctggatgttatatccttttaacagattctatcctttgaataactcgtcaatgaatttcacttaatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAG
species | Glycine max |
transcript | GLYMA08G42300.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|207694669|gb|GD676528.1|GD676528
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|6665849|gb|AW277299.1|AW277299
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|298164275|gb|HO013920.1|HO013920
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGGAGACAAATTCGGGATATTCAGAATCTAAACAG TCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|17020848|gb|BM091882.1|BM091882
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|8285076|gb|BE022635.1|BE022635
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193359674|gb|FK323758.1|FK323758
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193362757|gb|FK324405.1|FK324405
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAAGAEST: gi|298181403|gb|HO022842.1|HO022842
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAA-GA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|6666384|gb|AW277843.1|AW277843
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193662744|gb|FK604008.1|FK604008
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193716892|gb|FK654660.1|FK654660
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|9985912|gb|BE659918.1|BE659918
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193632718|gb|FK580566.1|FK580566
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|298186356|gb|HO036989.1|HO036989
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|298187885|gb|HO031842.1|HO031842
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|298198572|gb|HO040111.1|HO040111
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|298181551|gb|HO025726.1|HO025726
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|193437618|gb|FK399131.1|FK399131
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|6454914|gb|AW185524.1|AW185524
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAAEST: gi|208212735|gb|GE013208.1|GE013208
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
EST: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAG GCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
genomic: GAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGgtcagtttct ... taatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAA
tttaacagattctatcctttgaataactcgtcaatgaatttcacttaatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAG
tttcactt CT-rich tract
aatttcacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtttctggatgttatatccttttaacagattctatcctttgaataactcgtcaatgaatttcacttaatttgcagGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA