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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtactttatgagcctgttgaatgatattattttatccaataacactttgttgataatgtaatttcctgcttttcagGCCTGGAGTTTGGGGAAATGAAG

Basic information

species Glycine max
transcript GLYMA08G41630.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209701051|gb|BW652163.1|BW652163
EST:     TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTG                         GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG
EST: gi|10231875|gb|BE800763.1|BE800763
EST:     TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTG                         GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG
EST: gi|22524681|gb|BU083492.1|BU083492
EST:     TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTG                         GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG
EST: gi|14205390|gb|BG839068.1|BG839068
EST:     TTTATCAGCTTCATTG                         GCCTGGAGTTT-GGGAAATGAAG
genomic: TTTATCAGCTTCATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG
EST: gi|9259707|gb|BE347854.1|BE347854
EST:     TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTG                         GCCTGGAGTTTGGGGAAATGAAG
genomic: TCCCTTTGTCGACTAGGACTGACTTCAGTGGATCTTTATCAGCTTCATTGgtcagtactt ... tgcttttcagGCCTGGAGTTTGGGGAAATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatattattttatccaataacactttgttgataatgtaatttcctgcttttcagGCCTGGAGTTTGGGGAAATGAAG
                                        tttcctgcttttc  CT-rich tract
     ttattttatccaataa  TA-rich tract