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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatattagatttttttgctctattaatttctactccaattgcgtagtataagattatttcaaatattattttggcaactatcttgcatgctggaaattactaaatgatagttccttttgattgaaattcatcaacttcttgcagCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAG

Basic information

species Glycine max
transcript GLYMA08G41570.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41570.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0028g01120.t01 (Vitis vinifera), 3'ss of exon 4
gtaagtatattagatttttttgctctattaatttctactccaattgcgtagtataagattatttcaaatattattttggcaactatcttgcatgctggaaattactaaatgatagttccttttgattgaaattcatcaacttcttgcagCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAG
                                   |    || || |   | | || ||||| ||||| |    ||       ||||    || ||  | |||| |             ||||   |||   | ||   ||| | |||||||||  || ||||||||||||||||| || ||||||||||| || ||   | |  |||||| |  |||||||  ||||||| | |||
---------------------------------attgtagcatttccaatgcaaaaaattatctcaaagaaaccttcttttgttatc----atactccatattattgg-----------ttttaggtgattattattgtcttat-gcagCTATGCCCTCTTTGATATGGATGGGAATCAAGTTCCTCAAGAATTAGTCCGAGAGATTGGTGTAGCATTTGAGAAAATTTTGGAAGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298163510|gb|HO012243.1|HO012243
EST:     TACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAG                         CTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGC
genomic: TACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGgtaagtatat ... cttcttgcagCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGC
EST: gi|7673728|gb|AW160135.1|AW160135
EST:     TACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAG                         CTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGC
genomic: TACCGTACTAGTGGGGATAATTCCATACTCTATGACCATGATTTGGAAAGgtaagtatat ... cttcttgcagCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctggaaattactaaatgatagttccttttgattgaaattcatcaacttcttgcagCTATGGACTTTTTGATATGGATGGGAAACAGGTTCCTCAAGAGTTGGTAGCAAAAGTTGGTGAAATATTTGAGGCAATTTTGCAGGAG
                                             cttcttgc  CT-rich tract
     aattactaaatgata  TA-rich tract