Sequence
atgc intronic sequence ATGC exonic sequence...aagaatcaagagtaaataagaatgcttgagattaatgtgctgaatccttatattgattggtattggtaataacttaactgggaacttattggtgccatagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA
Basic information
species | Glycine max |
transcript | GLYMA08G41510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G41510.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G22330.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------aagaatcaagagtaaataa------gaatgcttgag--attaatgtgctgaatccttatattgattggtattggtaataacttaactgggaacttattg-gtgccat--agGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA
| ||| || ||| | | | ||| |||||| ||| | ||||| | | || | | || || || | | | ||| || |||||||||||||||||||||| | |||||||||||| || || ||||| | | ||||| || | |||| ||| ||| ||||| ||||
gtgagtagtcttgtaccctctgaaatttctcacaattctgaataattgatcttggagttagcagagttgttaatgaagtgatttcttatgtgaaatg-tgcttctatgtttttgtttgcctaactgtgatgtgttattcagGTTGGAGATTCTGATCAGAAACTAGCAGATGGAATTACGACATATTCTATCATAGCAGATTCTTATGGAAGAGCATCCATTATTGGTCCTCTTGTAACG
upper sequence: GLYMA08G41510.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0142g00670.t01 (Vitis vinifera), 3'ss of exon 3
---------------------------------------------aagaatcaagagtaaataagaatgcttgagattaatgtgctgaatccttata--ttgattggtattggtaataacttaactgggaacttattggtgccatagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA
| || | | | || | || || || || | | |||||| ||| | |||||| | | || | ||||| || ||||||||||||||||||||||| |||||||| | || ||||||| || || ||| ||||| |||| ||| ||| |||||||||
gtgagtttggagagtttgtttttccatttcttattcgctggttgtagtaactattatccttttccaagctatattatgaaaaggcatgttcttaactatttgattcttatgactgcaaactta-ttaatattggatgttcactgtagGTAGGGGATTCTGATCAGAAGTTGGCAGAAGGAATTTCCCTATATTCTATTGCATCGGAAATGTATGAGAAAGCTTCAATTGTTGGACCACTGATAACA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttatattgattggtattggtaataacttaactgggaacttattggtgccatagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA
taataacttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aagaatcaagagtaaataagaatgcttgagattaatgtgctgaatccttatattgattggtattggtaataacttaactgggaacttattggtgccatagGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACA
- - - - - - - - - -gaatgct
- - - - - - - - - - - - - - - - - - -tgctgaa