Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacaaatggacaaaggtttcttaaagttgataatagctttgacttttggttatatgtttaagacaatgaatctgataggttctcaatatgctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGT

Basic information

species Glycine max
transcript GLYMA08G41460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G41460.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g03740.t01 (Vitis vinifera), 3'ss of exon 3
tacaaatggacaaaggtttcttaaagttgataatagctttgacttttggttatatgtttaagacaatgaatctgataggttctcaatatgctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGT
      || | |     |||||     | | |  |  | ||| | || ||| ||  |     |  || |||   || ||   ||  | || ||  ||||| |||||||| |||||||||||  |||||||||||||||||| ||| || |||| ||||||||| || ||||||||  |||| ||| | ||||| ||||||
-----gtgaata-----ttcttcctcctaacacaa--tgtgaatgttcgttgtacct---gaattataaattctatgggccttctct-tgatac-tgcagGCTTGCTGTGGAGGCATGGGGCCTGAAGAATTGCACCCAAAGGGAGGAATGGTTCAGTGACACCGTCACTGCTGTGGTTGTGCCTCCATACATCGATAGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9259733|gb|BE347880.1|BE347880
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCAT-GGTTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|22524554|gb|BU083365.1|BU083365
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31471820|gb|CD413848.1|CD413848
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCCAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|27426341|gb|CA937861.1|CA937861
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAG
EST: gi|31307926|gb|CD393129.1|CD393129
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|27424859|gb|CA936379.1|CA936379
EST:     GGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|21257323|gb|BQ454211.1|BQ454211
EST:     TAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: TAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|4299194|gb|AI442869.1|AI442869
EST:     GCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|13788349|gb|BG650941.1|BG650941
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31457817|gb|CD399845.1|CD399845
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31308337|gb|CD393540.1|CD393540
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31457205|gb|CD399233.1|CD399233
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCCAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|6134670|gb|AW133063.1|AW133063
EST:     GGACTCGAAAATGTGATCACAAGGCACAGACGTTTAGGCAAAGCAACCAG                         ACTTGCTGGAGATGCATGGGGTTGAGAAGAAT-GCCCCCAAAAG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTT-GAAGAATTGCACCCAAAAG
EST: gi|120532280|gb|EH260413.1|EH260413
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGG
EST: gi|21676622|gb|BQ628973.1|BQ628973
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|120494578|gb|EH222745.1|EH222745
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31475870|gb|CD417898.1|CD417898
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|27426173|gb|CA937693.1|CA937693
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|22525927|gb|BU084738.1|BU084738
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|6667723|gb|AW279174.1|AW279174
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|8669802|gb|BE190909.1|BE190909
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|192304639|gb|FG998725.1|FG998725
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31310587|gb|CD395790.1|CD395790
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCCAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|120493283|gb|EH221450.1|EH221450
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|5760160|gb|AI965523.1|AI965523
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31458330|gb|CD400358.1|CD400358
EST:     GACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCCAAAGGAAGAGTG
genomic: GACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|20497989|gb|BQ272919.1|BQ272919
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|20814744|gb|BQ299222.1|BQ299222
EST:     GCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|22541687|gb|BU091530.1|BU091530
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|17519598|gb|BM188640.1|BM188640
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|4296677|gb|AI442509.1|AI442509
EST:     AAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: AAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|6482389|gb|AW201650.1|AW201650
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|15663381|gb|BI700752.1|BI700752
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|120493686|gb|EH221853.1|EH221853
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|120532807|gb|EH260940.1|EH260940
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACC-AAAAGGGAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|15285749|gb|BI469640.1|BI469640
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|13562495|gb|BG550715.1|BG550715
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGTACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|23062837|gb|BU578530.1|BU578530
EST:     TCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: TCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31462157|gb|CD404185.1|CD404185
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|15814493|gb|BI786768.1|BI786768
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31463336|gb|CD405364.1|CD405364
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCNAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|7283838|gb|AW596440.1|AW596440
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACGCAATAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|10232118|gb|BE801006.1|BE801006
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAG-CAAAGCAACCAA                         ACTTGCTGTAGAGGCATGTGGTTTGA-GAATTG-ACCCAAAACGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|17519105|gb|BM188147.1|BM188147
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31470545|gb|CD412573.1|CD412573
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|23052988|gb|BU577479.1|BU577479
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31561776|gb|CD487614.1|CD487614
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|21676215|gb|BQ628566.1|BQ628566
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|6914551|gb|AW396081.1|AW396081
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|22524568|gb|BU083379.1|BU083379
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
EST: gi|31470394|gb|CD412422.1|CD412422
EST:     GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAG                         ACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG
genomic: GGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaaggcatg ... ctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttatatgtttaagacaatgaatctgataggttctcaatatgctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGT
                                           tgctaaa  putative branch site (score: 2)
     tatatgtttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacaaatggacaaaggtttcttaaagttgataatagctttgacttttggttatatgtttaagacaatgaatctgataggttctcaatatgctaaatgcagACTTGCTGTAGAGGCATGGGGTTTGAAGAATTGCACCCAAAAGGAAGAGTGGTACAGTGACACTGTGACTGCTGTTCTTGTTCCTGCTTACATTGATAGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT