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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttctctgtttcaccttttccctttatttacttttgtttgcaattcactgttttaaacttttgatttaaaattttattgccttaataataatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTATTTAGATGATGATTACTTGGTTTTCGACTGCCCTG

Basic information

species Glycine max
transcript GLYMA08G39880.1
intron # 4
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17021922|gb|BM092956.1|BM092956
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|192306146|gb|FG996578.1|FG996578
EST:     TGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: TGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|192299207|gb|FG988665.1|FG988665
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|209724731|gb|BW651474.1|BW651474
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|209716787|gb|BW665465.1|BW665465
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|298191853|gb|HO035935.1|HO035935
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGGGGAACTGGACA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACA
EST: gi|192306145|gb|FG996577.1|FG996577
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
EST: gi|192297923|gb|FG993202.1|FG993202
EST:     ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGA                         ACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA
genomic: ATGGAGGAACTTGGATTGGGTCCTAATGGTGGTCTTGTCTACTGCATGGAgtatcctttt ... taatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcactgttttaaacttttgatttaaaattttattgccttaataataatatttagACACCTTGAAGATAACCTAGATGATTGGCTCACTGAGGAACTGGACAATTATTTAGATGATGATTACTTGGTTTTCGACTGCCCTG
                                  tgccttaat  putative branch site 
               ttttgatttaaaattt  TA-rich tract