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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgctagatctcttggacatatgtcgctttctagtagcaattcctttgatagtttatttatcttctcacgtctccttttggatttgctttattttatcagTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGT

Basic information

species Glycine max
transcript GLYMA08G39830.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298196169|gb|HO044560.1|HO044560
EST:     CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAG                         TAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC
genomic: CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGgtgtgtttgt ... attttatcagTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC
EST: gi|207774106|gb|GD745566.1|GD745566
EST:     CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAG                         TAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC
genomic: CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGgtgtgtttgt ... attttatcagTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC
EST: gi|192301057|gb|FG990127.1|FG990127
EST:     CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAG                         TAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC
genomic: CCAAGTCCTTATCGGCGTCGTAGAAGTCCGAGTTATGGTTATGATCGCAGgtgtgtttgt ... attttatcagTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatagtttatttatcttctcacgtctccttttggatttgctttattttatcagTAGTTATAGCCCTCGTGGGAGAAGATCTCCAAGACGACGTAGCATTTCACCTCCCTGGGGTCGCAACTACAGCAGGTCCCCTCCATATCGTCCTCGCCGT
                 ttctcac  putative branch site (score: 2)
                                         ctttatttt  putative PPT
                                    atttgctttattttat  TA-rich tract