Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctatataatctgttgtatttatgattgtgcttctgaaatgtgtttgaatccttcctccttaaaactccagATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTG

Basic information

species Glycine max
transcript GLYMA08G36840.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G36840.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s2044g00010.t01 (Vitis vinifera), 3'ss of exon 2
------------------gtgagtctatataatctgttgtatttatgattgtgcttctgaaat--gtgtttgaatccttcctccttaaa-----actccagATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTG
                   ||    |        | || | ||||| |||     | || |||   || || |    |||  |  | |      | ||||||| || |||| |||||||||||| ||| ||| |||||| |||||||||||||||||| |||||||| | || || || || ||||||||    | |||||
gtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctatcattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG

upper sequence: GLYMA08G36840.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv00s2201g00010.t01 (Vitis vinifera), 3'ss of exon 2
------------------gtgagtctatataatctgttgtatttatgattgtgcttctgaaat--gtgtttgaatccttcctccttaaa-----actccagATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTG
                   ||    |        | || | ||||| |||     | || |||   || || |    |||  |  | |      | ||||||| || |||| |||||||||||| ||| ||| |||||| |||||||||||||||||| |||||||| | || || || || ||||||||    | |||||
gtatgtcatgcatatcgtctggaaattgccttcttattttgtttataattagatgtttgcaattcatggttcaccatttctgctattattgcttaatccagATATTGACAATATTAAAGAGGAACTTGGACATACCAGTCACATGTAAGATTCGACTTTTAAAATCATCTCAAGAGACGGTAGAATTAGCACAGCAAATTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatttatgattgtgcttctgaaatgtgtttgaatccttcctccttaaaactccagATCTTAACAACATTAAAGAGGAATTTGAACACACCAGTAACATGTAAGATTCGACTTCTAAAATCACCACATGATACCGTGGAATTAGCCAGACGAATTG
                                 tccttcctcctta  CT-rich tract
                                           ttaaaact  TA-rich tract