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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaatttaaacaattcaatttgaggagtaacactagagctgtccttcgttcatacttcattgtgttcctctgttcaattgttttacttctctttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATG

Basic information

species Glycine max
transcript GLYMA08G36370.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G36370.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv01s0010g01110.t01 (Vitis vinifera), 3'ss of exon 4
--aaatttaaacaattcaatttgaggagtaacactagagctgtccttcgttcatacttcattgtgttcctctgttcaattgttttacttctctttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATG
  | ||    | |  ||  ||| |    | |||   ||  |  ||||  ||   | ||  |  |  ||  |    ||    ||||     ||||  |  ||||||||||||| | || |||||||| |||||||||||   |||||| || ||||| ||||||||| ||||||||| |||||| | ||||||||||||| | 
taagatccttaaatatccttttaat--atgacaaaggattttccctttcttggaaatttctattcgtctcccaaccaccatttttttccttcttgatggcagCTATGAAGTTATCCTGACCTTGGACAAGGAAAAGCATGCAGTGGAAGGACCAATTTATTATTATTTGTTCAATACTCTTCTATTCTGCTTGCTTGTTCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208257721|gb|GE053762.1|GE053762
EST:     TACCCATTCTGGATTTCTTTGGAGTACAAG                         CTATGAAGTTCTGCTCACCTTGGATAAAGGAAAAGCACCAAGTGGATGGTC
genomic: TACCCATTCTGGA-TTCTTTGGAGTACAAGgtttatattt ... tttttaccagCTATGAAGTTCTGCTCACCTTGGAT-AAGGAAAAGCACCAAGTGGATGGTC
EST: gi|254327014|gb|GR836623.1|GR836623
EST:     GTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAG                         CTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCC
genomic: GTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatattt ... tttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCC
EST: gi|254327013|gb|GR836622.1|GR836622
EST:     GTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAG                         CTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCC
genomic: GTCTCATTTACTACCCATTCTGGATTCTTTGGAGTACAAGgtttatattt ... tttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttcatacttcattgtgttcctctgttcaattgttttacttctctttttaccagCTATGAAGTTCTGCTCACCTTGGATAAGGAAAAGCACCAAGTGGATGGTCCAATATATTATTATGTGTTCAATAGTCTTCTTTACTGCTTGCTTGTTATG
                               ttgttttacttctctt  CT-rich tract
                             aattgtttta  TA-rich tract