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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggtacttaatttgttttgttgagtgtcatcattttctcttgtagattttggtaatgtttattttccttacggatatcatcatttatatgattttagGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATG

Basic information

species Glycine max
transcript GLYMA08G35510.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 4
lower sequence: AT3G54230.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatgtggtacttaatttgttttgttgagtgtcatcattttctcttgtagattttggtaatgtttattttccttacggatatcatcatttatatg---attttagGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATG
       |||     ||  |||| |||| | |    || | |||    || |||    |||     ||||| |    ||  |||| |||   |||   ||  |||||||||||||||||  | | |||||||||||||||   ||||  |||||||||  | |||||||||||||| || |||||||| ||  |  ||
-------gtaaactcttcatttttttgaatctg--tatgtcctc----aggtttaaacaat-----ttttcatgcatgacttcattattcccatgtgcatgctagGCTGAATGGGGTCCTTTGCATCATGTTCGTGTTATTCGGGAGCAAAATTCTGGGATTTCTCGTGGATTTGCTTTTATTGATTTCCCCACGGTG

upper sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 4
gtatgtggtacttaatttgttttgttgagtgtcatcattttctcttgtagattttggtaatgtttattttccttacggatatcatcatttatatgattttagGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATG
    ||  || |  | ||| ||  || | | | |  ||  | |    | |   |  |   |  || |||     |    | ||| ||||||  || | ||||||||||||||| ||||| || ||||||||||| || || ||  ||| ||||||| | ||||| |||||||| || ||||||||||||||| ||
----gtactattctacttgattcttttactttgaatatcatttggaat-gccctctgccttccttgtttataacattc-tttcaacatttac-tgttattagGCTGAATGGGGACCCCTTCGGCATGTTCGTGTGATTAAAGAACGAAGTTCTGGCATATCTCGAGGATTTGCTTTTATTGATTTTCCTTCTGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagattttggtaatgtttattttccttacggatatcatcatttatatgattttagGCTGAATGGGGTCCCCTCCGTCATGTTCGTGTTATAAAGGAGAGAAATTCTGGCGTCTCTCGTGGATTTGCATTCATTGATTTTCCTTCTATG
                      tccttac  putative branch site (score: 2)
                               atatcatcatttatat  TA-rich tract