1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctatccagtagcaactctaaatcaactttgtctctgttttttcttcctaactagtattttatttactaagtattttgttttctctgtaaaattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAA
species | Glycine max |
transcript | GLYMA08G33830.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|18038716|gb|BM307010.1|BM307010
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: CTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|254316174|gb|GR827711.1|GR827711
genomic: CTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|207762743|gb|GD732974.1|GD732974
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|13563522|gb|BG551742.1|BG551742
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|14991862|gb|BI317535.1|BI317535
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|192305727|gb|FG995697.1|FG995697
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTTTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|22524377|gb|BU083188.1|BU083188
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|13481965|gb|BG511308.1|BG511308
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|7590643|gb|AW706391.1|AW706391
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATEST: gi|19345846|gb|BM890726.1|BM890726
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
EST: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTG AAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
genomic: AACTACATCAGGGGAGCGTTCTTCTGGAAGAATAGCCATGAAAAGATTTGgtcagttatc ... aattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTAT
tcctaactagtattttatttactaagtattttgttttctctgtaaaattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAA
tcctaac putative branch site (score: 1)
tagtattttatttact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatccagtagcaactctaaatcaactttgtctctgttttttcttcctaactagtattttatttactaagtattttgttttctctgtaaaattctgcagAAGAAATGGATTGGGATAAAAATGGAATGGTTAACTTCAAGGAGTTTCTATTTGCTTTTACACGTTGGGTTGGAATTGATGAAGTTGACGATGAGGAAAA
- - - - - - caactct
- - - - - - - - - - - - - - - gtctctg
- - - - - - - - - - - - - - - - - - - - -ttcttcc